Results 1 - 20 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 20219 | 1.1 | 0.005538 |
Target: 5'- aACAGCAACAGCAGCAAGAGCAGCAACa -3' miRNA: 3'- -UGUCGUUGUCGUCGUUCUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 149475 | 1.04 | 0.013795 |
Target: 5'- gGCGGCGGCGGCAGCGGGAGCAGCGACa -3' miRNA: 3'- -UGUCGUUGUCGUCGUUCUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 27382 | 0.96 | 0.047824 |
Target: 5'- gGCAGCAGCAGCAGCAGcAGCGGCGGCa -3' miRNA: 3'- -UGUCGUUGUCGUCGUUcUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 56717 | 0.92 | 0.085562 |
Target: 5'- cGCAGCGGCGGCGGCGGcGGCAGCAGCu -3' miRNA: 3'- -UGUCGUUGUCGUCGUUcUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 71673 | 0.92 | 0.087936 |
Target: 5'- uCAGCAGCAGCAGCGGcGGCGGCAACg -3' miRNA: 3'- uGUCGUUGUCGUCGUUcUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 163639 | 0.9 | 0.109309 |
Target: 5'- aGCGGCGGCGGCGGCGGcAGCGGCAGCg -3' miRNA: 3'- -UGUCGUUGUCGUCGUUcUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 97258 | 0.9 | 0.115369 |
Target: 5'- aGCAGCAGCGGCAGC-AGAcgucGCAGCAGCg -3' miRNA: 3'- -UGUCGUUGUCGUCGuUCU----CGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 43598 | 0.88 | 0.154648 |
Target: 5'- gGCGGCAACGGUAGgaaaGAGAGCGGCGGCg -3' miRNA: 3'- -UGUCGUUGUCGUCg---UUCUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 52223 | 0.87 | 0.1673 |
Target: 5'- aACAGCAggaacaACAGCAGCAGGAGaAGCAACa -3' miRNA: 3'- -UGUCGU------UGUCGUCGUUCUCgUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 36636 | 0.87 | 0.17172 |
Target: 5'- -uGGCGGCGGCAGCGAGAGCgacgauAGCGACg -3' miRNA: 3'- ugUCGUUGUCGUCGUUCUCG------UCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 73978 | 0.86 | 0.190455 |
Target: 5'- gGCGGCAGCAGUGGCGccAGCAGCGGCg -3' miRNA: 3'- -UGUCGUUGUCGUCGUucUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 62618 | 0.85 | 0.22191 |
Target: 5'- cCGGCGGCAGCAGCcgcGGCAGCAGCa -3' miRNA: 3'- uGUCGUUGUCGUCGuucUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 128737 | 0.85 | 0.22191 |
Target: 5'- gGCAGCAGCAGCGGCGcuGGCAGUggUa -3' miRNA: 3'- -UGUCGUUGUCGUCGUucUCGUCGuuG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 70107 | 0.85 | 0.227564 |
Target: 5'- aGCAGCAcCGGCAGCGGcGGCGGCGGCg -3' miRNA: 3'- -UGUCGUuGUCGUCGUUcUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 154153 | 0.83 | 0.290984 |
Target: 5'- gGCGGUGGCGGCGGCGGcGGCGGCGGCu -3' miRNA: 3'- -UGUCGUUGUCGUCGUUcUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 128760 | 0.83 | 0.298035 |
Target: 5'- aGCGGCAGCGGCAGCGuugAGGGCgccgucgccGGCGGCa -3' miRNA: 3'- -UGUCGUUGUCGUCGU---UCUCG---------UCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 30079 | 0.82 | 0.315497 |
Target: 5'- gGCGGCGguggaagcgaggccaGCGGUAGCGAGAGCuGCAGCc -3' miRNA: 3'- -UGUCGU---------------UGUCGUCGUUCUCGuCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 19236 | 0.82 | 0.330631 |
Target: 5'- gACAGCAgggacaGCAGCAGCAcagccaccacacccaGGuGCAGCAGCa -3' miRNA: 3'- -UGUCGU------UGUCGUCGU---------------UCuCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 168546 | 0.82 | 0.343117 |
Target: 5'- aGCGGCGguggugGCAGCGGCGGcGGCGGCGACa -3' miRNA: 3'- -UGUCGU------UGUCGUCGUUcUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 24063 | 0.81 | 0.367434 |
Target: 5'- -gAGCGGCGGCAGCAuGAGCGGCu-- -3' miRNA: 3'- ugUCGUUGUCGUCGUuCUCGUCGuug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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