miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 24528 0.79 0.466155
Target:  5'- gAUGGCGGCGGCAGCGAcGA-CGGCAGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUU-CUcGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 28682 0.81 0.375799
Target:  5'- cGCAGCAACAGCAGuCAcgcAGAaGCAGCAc- -3'
miRNA:   3'- -UGUCGUUGUCGUC-GU---UCU-CGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 100640 0.81 0.375799
Target:  5'- uCGGCGGCAGCGGCGAGAaCAGgGACu -3'
miRNA:   3'- uGUCGUUGUCGUCGUUCUcGUCgUUG- -5'
15674 3' -52.3 NC_004065.1 + 62368 0.81 0.384292
Target:  5'- gACGGCggUGGCGGCGGGGGUGGUGGCg -3'
miRNA:   3'- -UGUCGuuGUCGUCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 62647 0.8 0.39291
Target:  5'- gACAGCAGCauuGGCGGCgGAGAcgGCAGCGGCg -3'
miRNA:   3'- -UGUCGUUG---UCGUCG-UUCU--CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 35624 0.8 0.401653
Target:  5'- gGCGGCGGCGGCGGCGGGGaugucauCGGCGACa -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUCUc------GUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 75784 0.8 0.401653
Target:  5'- gGCGGCGGuCGGCgAGgGGGAGCGGCGGCg -3'
miRNA:   3'- -UGUCGUU-GUCG-UCgUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 62088 0.8 0.419506
Target:  5'- -gGGCGACGGCAGC---GGCAGCGGCg -3'
miRNA:   3'- ugUCGUUGUCGUCGuucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 151117 0.8 0.419506
Target:  5'- gACGaCGGCAGCAGCGAaGGCGGCGGCa -3'
miRNA:   3'- -UGUcGUUGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 24063 0.81 0.367434
Target:  5'- -gAGCGGCGGCAGCAuGAGCGGCu-- -3'
miRNA:   3'- ugUCGUUGUCGUCGUuCUCGUCGuug -5'
15674 3' -52.3 NC_004065.1 + 168546 0.82 0.343117
Target:  5'- aGCGGCGguggugGCAGCGGCGGcGGCGGCGACa -3'
miRNA:   3'- -UGUCGU------UGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 30079 0.82 0.315497
Target:  5'- gGCGGCGguggaagcgaggccaGCGGUAGCGAGAGCuGCAGCc -3'
miRNA:   3'- -UGUCGU---------------UGUCGUCGUUCUCGuCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 56717 0.92 0.085562
Target:  5'- cGCAGCGGCGGCGGCGGcGGCAGCAGCu -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 71673 0.92 0.087936
Target:  5'- uCAGCAGCAGCAGCGGcGGCGGCAACg -3'
miRNA:   3'- uGUCGUUGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 163639 0.9 0.109309
Target:  5'- aGCGGCGGCGGCGGCGGcAGCGGCAGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 43598 0.88 0.154648
Target:  5'- gGCGGCAACGGUAGgaaaGAGAGCGGCGGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCg---UUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 62618 0.85 0.22191
Target:  5'- cCGGCGGCAGCAGCcgcGGCAGCAGCa -3'
miRNA:   3'- uGUCGUUGUCGUCGuucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 70107 0.85 0.227564
Target:  5'- aGCAGCAcCGGCAGCGGcGGCGGCGGCg -3'
miRNA:   3'- -UGUCGUuGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 154153 0.83 0.290984
Target:  5'- gGCGGUGGCGGCGGCGGcGGCGGCGGCu -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 128760 0.83 0.298035
Target:  5'- aGCGGCAGCGGCAGCGuugAGGGCgccgucgccGGCGGCa -3'
miRNA:   3'- -UGUCGUUGUCGUCGU---UCUCG---------UCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.