miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 28682 0.81 0.375799
Target:  5'- cGCAGCAACAGCAGuCAcgcAGAaGCAGCAc- -3'
miRNA:   3'- -UGUCGUUGUCGUC-GU---UCU-CGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 100640 0.81 0.375799
Target:  5'- uCGGCGGCAGCGGCGAGAaCAGgGACu -3'
miRNA:   3'- uGUCGUUGUCGUCGUUCUcGUCgUUG- -5'
15674 3' -52.3 NC_004065.1 + 164951 0.81 0.384292
Target:  5'- cCGGCGGCGGCGGCGGcAGCAGCuGCg -3'
miRNA:   3'- uGUCGUUGUCGUCGUUcUCGUCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 62368 0.81 0.384292
Target:  5'- gACGGCggUGGCGGCGGGGGUGGUGGCg -3'
miRNA:   3'- -UGUCGuuGUCGUCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 62647 0.8 0.39291
Target:  5'- gACAGCAGCauuGGCGGCgGAGAcgGCAGCGGCg -3'
miRNA:   3'- -UGUCGUUG---UCGUCG-UUCU--CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 35624 0.8 0.401653
Target:  5'- gGCGGCGGCGGCGGCGGGGaugucauCGGCGACa -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUCUc------GUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 75784 0.8 0.401653
Target:  5'- gGCGGCGGuCGGCgAGgGGGAGCGGCGGCg -3'
miRNA:   3'- -UGUCGUU-GUCG-UCgUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 62088 0.8 0.419506
Target:  5'- -gGGCGACGGCAGC---GGCAGCGGCg -3'
miRNA:   3'- ugUCGUUGUCGUCGuucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 151117 0.8 0.419506
Target:  5'- gACGaCGGCAGCAGCGAaGGCGGCGGCa -3'
miRNA:   3'- -UGUcGUUGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 24528 0.79 0.466155
Target:  5'- gAUGGCGGCGGCAGCGAcGA-CGGCAGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUU-CUcGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 169814 0.79 0.475807
Target:  5'- aGCGGCAACAGCGcGCAGaaaccGAGaCGGCGGCg -3'
miRNA:   3'- -UGUCGUUGUCGU-CGUU-----CUC-GUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 97222 0.78 0.485556
Target:  5'- gACGGcCGGC-GCAGCAGGcGCGGCAGCa -3'
miRNA:   3'- -UGUC-GUUGuCGUCGUUCuCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 36226 0.78 0.505332
Target:  5'- cUAGUAAguGaGGCAGGAGCAGCGGCg -3'
miRNA:   3'- uGUCGUUguCgUCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 45462 0.78 0.505332
Target:  5'- aACGGUGGCGGUGGCGGcAGCGGCGGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 73936 0.78 0.50933
Target:  5'- aGCGGCGGCAGCAGCAagaaagaagaggaaaGGAGgaAGCAAUu -3'
miRNA:   3'- -UGUCGUUGUCGUCGU---------------UCUCg-UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 97339 0.78 0.51535
Target:  5'- cGCGGagaCAGCAGCAGCAccAGCAGCAAUc -3'
miRNA:   3'- -UGUC---GUUGUCGUCGUucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 99421 0.78 0.51535
Target:  5'- aGguGCAGCAGCAGCuGGAgGCGGCcACg -3'
miRNA:   3'- -UguCGUUGUCGUCGuUCU-CGUCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 113963 0.78 0.525447
Target:  5'- uCGGCGuCGGCGGCGGcAGCGGCGACg -3'
miRNA:   3'- uGUCGUuGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 24852 0.78 0.525447
Target:  5'- aACAcCGGCGGCGGCGGuGGCGGCGACg -3'
miRNA:   3'- -UGUcGUUGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 64532 0.78 0.535618
Target:  5'- cGCAGCAGCuGCGGCGcGA-CGGCGACa -3'
miRNA:   3'- -UGUCGUUGuCGUCGUuCUcGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.