miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15675 3' -55.2 NC_004065.1 + 99510 0.66 0.978077
Target:  5'- -cGACGACGAcgucgagaaccugcaGGCGuucGCGAGgCGGAu -3'
miRNA:   3'- gcCUGUUGCU---------------CCGCuuuCGCUC-GCCU- -5'
15675 3' -55.2 NC_004065.1 + 88687 0.66 0.978077
Target:  5'- gCGGACGACguccgcgucguacauGAcguucucgcGGCGcGAGCG-GCGGAu -3'
miRNA:   3'- -GCCUGUUG---------------CU---------CCGCuUUCGCuCGCCU- -5'
15675 3' -55.2 NC_004065.1 + 65918 0.66 0.977158
Target:  5'- uCGGGCGuCGGaucuuccugcGGCGgcAGCGgcAGCGGGu -3'
miRNA:   3'- -GCCUGUuGCU----------CCGCuuUCGC--UCGCCU- -5'
15675 3' -55.2 NC_004065.1 + 126292 0.66 0.977158
Target:  5'- uGGACGugcUGaAGGUG--GGCGAGCGGc -3'
miRNA:   3'- gCCUGUu--GC-UCCGCuuUCGCUCGCCu -5'
15675 3' -55.2 NC_004065.1 + 73956 0.66 0.977158
Target:  5'- gCGG-CGGCgGAGGaggaGGAAGCG-GCGGc -3'
miRNA:   3'- -GCCuGUUG-CUCCg---CUUUCGCuCGCCu -5'
15675 3' -55.2 NC_004065.1 + 211365 0.66 0.977158
Target:  5'- uCGGuucuCAuaaacCGAGGCGAGacGGCGGGCa-- -3'
miRNA:   3'- -GCCu---GUu----GCUCCGCUU--UCGCUCGccu -5'
15675 3' -55.2 NC_004065.1 + 97368 0.66 0.977158
Target:  5'- uGGACAGCaGAGGaggaGGAGGaGAccgucGCGGAg -3'
miRNA:   3'- gCCUGUUG-CUCCg---CUUUCgCU-----CGCCU- -5'
15675 3' -55.2 NC_004065.1 + 143380 0.66 0.977157
Target:  5'- uCGGcCAuacugagaaaACGGGaCGAGAGCGAacGCGGGa -3'
miRNA:   3'- -GCCuGU----------UGCUCcGCUUUCGCU--CGCCU- -5'
15675 3' -55.2 NC_004065.1 + 98261 0.66 0.977157
Target:  5'- gGGACGGCGgcccuGGGCGc--GCGccucGCGGAu -3'
miRNA:   3'- gCCUGUUGC-----UCCGCuuuCGCu---CGCCU- -5'
15675 3' -55.2 NC_004065.1 + 77441 0.66 0.977157
Target:  5'- aCGGACGACGAcGCGGugccguacaccAAGCG-GCGc- -3'
miRNA:   3'- -GCCUGUUGCUcCGCU-----------UUCGCuCGCcu -5'
15675 3' -55.2 NC_004065.1 + 30075 0.66 0.977157
Target:  5'- -uGAUGGCGGcGGUGGAAGCGAggccaGCGGu -3'
miRNA:   3'- gcCUGUUGCU-CCGCUUUCGCU-----CGCCu -5'
15675 3' -55.2 NC_004065.1 + 116826 0.66 0.977157
Target:  5'- gGGGCAGCGuGGCcguGAugguGGUGcAGUGGGu -3'
miRNA:   3'- gCCUGUUGCuCCG---CUu---UCGC-UCGCCU- -5'
15675 3' -55.2 NC_004065.1 + 218314 0.66 0.97645
Target:  5'- uGGGCAGCGAGGUccggugaugcugguGGccGCGAucgucGCGGu -3'
miRNA:   3'- gCCUGUUGCUCCG--------------CUuuCGCU-----CGCCu -5'
15675 3' -55.2 NC_004065.1 + 229577 0.66 0.974735
Target:  5'- cCGGACGuuACGccGCGAGGGCGgcuccAGgGGGu -3'
miRNA:   3'- -GCCUGU--UGCucCGCUUUCGC-----UCgCCU- -5'
15675 3' -55.2 NC_004065.1 + 143828 0.66 0.974735
Target:  5'- gGGGCGAacaaggGAGGCGGAA---AGCGGAc -3'
miRNA:   3'- gCCUGUUg-----CUCCGCUUUcgcUCGCCU- -5'
15675 3' -55.2 NC_004065.1 + 117213 0.66 0.974735
Target:  5'- aGGugAugGCGGGGaCGGAcgucGCGAGCGa- -3'
miRNA:   3'- gCCugU--UGCUCC-GCUUu---CGCUCGCcu -5'
15675 3' -55.2 NC_004065.1 + 64202 0.66 0.974735
Target:  5'- -aGGCGGCG-GGCGGAGGCagugucGGCGGc -3'
miRNA:   3'- gcCUGUUGCuCCGCUUUCGc-----UCGCCu -5'
15675 3' -55.2 NC_004065.1 + 96652 0.66 0.974735
Target:  5'- gCGGACGACGAGGaguucGCcGAGCcGAu -3'
miRNA:   3'- -GCCUGUUGCUCCgcuuuCG-CUCGcCU- -5'
15675 3' -55.2 NC_004065.1 + 17948 0.66 0.974483
Target:  5'- aGcGACGACGAcggccacGGCGAuGGCGcGaCGGAc -3'
miRNA:   3'- gC-CUGUUGCU-------CCGCUuUCGCuC-GCCU- -5'
15675 3' -55.2 NC_004065.1 + 43025 0.66 0.973716
Target:  5'- gGGACGACGAcgagaggagagaaGCGAAAGagaagagaGAGCGGc -3'
miRNA:   3'- gCCUGUUGCUc------------CGCUUUCg-------CUCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.