miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 3' -54.2 NC_004065.1 + 129693 0.66 0.973563
Target:  5'- cGCCA-GGGCGUCUUCG--AUUAUCAc -3'
miRNA:   3'- -CGGUaCCUGCAGGAGCcgUAGUAGUa -5'
15676 3' -54.2 NC_004065.1 + 135404 0.67 0.964724
Target:  5'- cGUCAUcGACGUCCcCGuCGUCAUCAc -3'
miRNA:   3'- -CGGUAcCUGCAGGaGCcGUAGUAGUa -5'
15676 3' -54.2 NC_004065.1 + 142258 0.69 0.926426
Target:  5'- cGUCGUcGACGaUCCgccgCGGUAUCGUCGUc -3'
miRNA:   3'- -CGGUAcCUGC-AGGa---GCCGUAGUAGUA- -5'
15676 3' -54.2 NC_004065.1 + 146319 0.68 0.936545
Target:  5'- uGCgGUagcGGcacuCGUCCUCGGCAUCcUCGg -3'
miRNA:   3'- -CGgUA---CCu---GCAGGAGCCGUAGuAGUa -5'
15676 3' -54.2 NC_004065.1 + 146744 0.66 0.970818
Target:  5'- cGCCcacaucuauGUGGGCGUCggCGGCGUCugccgCAUc -3'
miRNA:   3'- -CGG---------UACCUGCAGgaGCCGUAGua---GUA- -5'
15676 3' -54.2 NC_004065.1 + 148755 0.72 0.777588
Target:  5'- -aCA-GGGCGUCCUCGGCGUCc---- -3'
miRNA:   3'- cgGUaCCUGCAGGAGCCGUAGuagua -5'
15676 3' -54.2 NC_004065.1 + 151790 0.76 0.589415
Target:  5'- cGgCAUGGACGUCCUCuccGCGcUCAUCAg -3'
miRNA:   3'- -CgGUACCUGCAGGAGc--CGU-AGUAGUa -5'
15676 3' -54.2 NC_004065.1 + 153125 0.68 0.931603
Target:  5'- aCCAaGGGCGcCUUCGGCAagacccggcUCGUCAc -3'
miRNA:   3'- cGGUaCCUGCaGGAGCCGU---------AGUAGUa -5'
15676 3' -54.2 NC_004065.1 + 168636 0.68 0.949976
Target:  5'- uGCCGcGGGCGgagCCggcgCGGCGaCGUCGUc -3'
miRNA:   3'- -CGGUaCCUGCa--GGa---GCCGUaGUAGUA- -5'
15676 3' -54.2 NC_004065.1 + 181516 0.68 0.931603
Target:  5'- gGCCGUGGGCGUugacggaugCCugaUCGGCgAUCAugaUCAUg -3'
miRNA:   3'- -CGGUACCUGCA---------GG---AGCCG-UAGU---AGUA- -5'
15676 3' -54.2 NC_004065.1 + 191718 0.68 0.94573
Target:  5'- -gCGUGGugGUgccgcaCCUCGGCGUCGa--- -3'
miRNA:   3'- cgGUACCugCA------GGAGCCGUAGUagua -5'
15676 3' -54.2 NC_004065.1 + 195641 0.7 0.869442
Target:  5'- cGCCGUGGAaGaCCUCGGC--CGUCAc -3'
miRNA:   3'- -CGGUACCUgCaGGAGCCGuaGUAGUa -5'
15676 3' -54.2 NC_004065.1 + 196800 0.71 0.85437
Target:  5'- gGCCGUGGGCG-CCUacgcgccggcaGGCGUCuUCAg -3'
miRNA:   3'- -CGGUACCUGCaGGAg----------CCGUAGuAGUa -5'
15676 3' -54.2 NC_004065.1 + 198371 0.69 0.919903
Target:  5'- cGCCAggaacagcgccGACGUCCcguagccCGGCGUCGUCAg -3'
miRNA:   3'- -CGGUac---------CUGCAGGa------GCCGUAGUAGUa -5'
15676 3' -54.2 NC_004065.1 + 200781 0.71 0.85437
Target:  5'- cGCCAUGGACGcCCUgugcgCGGCgAUCcgAUCGg -3'
miRNA:   3'- -CGGUACCUGCaGGA-----GCCG-UAG--UAGUa -5'
15676 3' -54.2 NC_004065.1 + 206541 0.66 0.978485
Target:  5'- ----cGGACGcgaaucggaCUCGGCGUCGUCAUc -3'
miRNA:   3'- cgguaCCUGCag-------GAGCCGUAGUAGUA- -5'
15676 3' -54.2 NC_004065.1 + 222894 0.66 0.973563
Target:  5'- -aCGUGGAUGUgaaagcUCUCGGCAUCGa--- -3'
miRNA:   3'- cgGUACCUGCA------GGAGCCGUAGUagua -5'
15676 3' -54.2 NC_004065.1 + 224382 0.67 0.961364
Target:  5'- uCCAUGuGGCGgcguUCCgUCGGCGUCAcCGUg -3'
miRNA:   3'- cGGUAC-CUGC----AGG-AGCCGUAGUaGUA- -5'
15676 3' -54.2 NC_004065.1 + 224879 0.68 0.949976
Target:  5'- aGCCAUccGGAcgcguacaCGUCCaCGGUGUCGUCGg -3'
miRNA:   3'- -CGGUA--CCU--------GCAGGaGCCGUAGUAGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.