Results 21 - 40 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15676 | 5' | -58.1 | NC_004065.1 | + | 30297 | 0.66 | 0.891921 |
Target: 5'- ---cGCUGCCGCUGUccucguucgugcccgUCACCA-CCg- -3' miRNA: 3'- aguaCGACGGCGGCG---------------AGUGGUaGGag -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 132216 | 0.66 | 0.895781 |
Target: 5'- aCAUGCUGCUGUCGaucuugCGCCugcacccguUCCUg -3' miRNA: 3'- aGUACGACGGCGGCga----GUGGu--------AGGAg -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 75746 | 0.66 | 0.874305 |
Target: 5'- uUCAcUGCgcccugauccucGCCGCCGC-CAUCGcCCUCg -3' miRNA: 3'- -AGU-ACGa-----------CGGCGGCGaGUGGUaGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 135306 | 0.66 | 0.889303 |
Target: 5'- ---cGCgGCUGCCGCguaCGCCugaCCUCu -3' miRNA: 3'- aguaCGaCGGCGGCGa--GUGGua-GGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 47590 | 0.66 | 0.898312 |
Target: 5'- cUCAUGUUGgccauccguugccccCCGCCGCggAUCggCCUCa -3' miRNA: 3'- -AGUACGAC---------------GGCGGCGagUGGuaGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 68875 | 0.66 | 0.861295 |
Target: 5'- ---aGCgacGCCaGCUGCUCGCUGUCCa- -3' miRNA: 3'- aguaCGa--CGG-CGGCGAGUGGUAGGag -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 200804 | 0.66 | 0.861295 |
Target: 5'- uUCccGCUGCCGCCcgucgccCUCGCCAUggacgcCCUg -3' miRNA: 3'- -AGuaCGACGGCGGc------GAGUGGUA------GGAg -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 96962 | 0.66 | 0.861295 |
Target: 5'- gUC-UGCUGCCGCgccugcugCGCcgGCCGUCCgUCg -3' miRNA: 3'- -AGuACGACGGCG--------GCGagUGGUAGG-AG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 132374 | 0.66 | 0.861295 |
Target: 5'- aCggGCagGCCGUCGCgUCGCCcUUCUCc -3' miRNA: 3'- aGuaCGa-CGGCGGCG-AGUGGuAGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 24590 | 0.66 | 0.861295 |
Target: 5'- gCGUGUcGUCGCCGC-CACCG-CCg- -3' miRNA: 3'- aGUACGaCGGCGGCGaGUGGUaGGag -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 118237 | 0.66 | 0.87571 |
Target: 5'- uUCAuUGUUaCUGCCGUcuucgucgucaUCAUCAUCCUCg -3' miRNA: 3'- -AGU-ACGAcGGCGGCG-----------AGUGGUAGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 118183 | 0.66 | 0.864242 |
Target: 5'- gUCAcgGCUGCCGCCGUUCgguugGcgcggcugacgcauuCCGUCgUCg -3' miRNA: 3'- -AGUa-CGACGGCGGCGAG-----U---------------GGUAGgAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 191314 | 0.66 | 0.868603 |
Target: 5'- -gAUGgUGCCgGCCGCgcgugaCACCAUCgcgCUCg -3' miRNA: 3'- agUACgACGG-CGGCGa-----GUGGUAG---GAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 163583 | 0.66 | 0.868603 |
Target: 5'- gCAaGCUGCCGuCCGC-CACCAgagUCa- -3' miRNA: 3'- aGUaCGACGGC-GGCGaGUGGUa--GGag -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 186095 | 0.67 | 0.830172 |
Target: 5'- aCGUGCUGCgGCCGgUCGaaugUCUCa -3' miRNA: 3'- aGUACGACGgCGGCgAGUgguaGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 70352 | 0.67 | 0.8461 |
Target: 5'- ---cGCUGCCgguGCUGCUCGUCG-CCUCg -3' miRNA: 3'- aguaCGACGG---CGGCGAGUGGUaGGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 47132 | 0.67 | 0.8461 |
Target: 5'- ---aGCUGCCGUCGgUCuCCGagCUCg -3' miRNA: 3'- aguaCGACGGCGGCgAGuGGUagGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 68351 | 0.67 | 0.853792 |
Target: 5'- ---cGCUGCacCGCCGaCUCGuCCGUCgUCu -3' miRNA: 3'- aguaCGACG--GCGGC-GAGU-GGUAGgAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 129005 | 0.67 | 0.853792 |
Target: 5'- ---cGCUGCCGCUGCcgCuGCCGacggcugCCUCg -3' miRNA: 3'- aguaCGACGGCGGCGa-G-UGGUa------GGAG- -5' |
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15676 | 5' | -58.1 | NC_004065.1 | + | 80270 | 0.67 | 0.853792 |
Target: 5'- aUAUGgaGgaCGUCGCUCACCAccgCCUUg -3' miRNA: 3'- aGUACgaCg-GCGGCGAGUGGUa--GGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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