miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 5' -58.1 NC_004065.1 + 81161 0.66 0.895781
Target:  5'- ---cGCcccCCGCCGC-CGCC-UCCUCg -3'
miRNA:   3'- aguaCGac-GGCGGCGaGUGGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 102236 0.66 0.882612
Target:  5'- gUCAUGCaGgCGCuCGacaUCGUCAUCCUCa -3'
miRNA:   3'- -AGUACGaCgGCG-GCg--AGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 191314 0.66 0.868603
Target:  5'- -gAUGgUGCCgGCCGCgcgugaCACCAUCgcgCUCg -3'
miRNA:   3'- agUACgACGG-CGGCGa-----GUGGUAG---GAG- -5'
15676 5' -58.1 NC_004065.1 + 132374 0.66 0.861295
Target:  5'- aCggGCagGCCGUCGCgUCGCCcUUCUCc -3'
miRNA:   3'- aGuaCGa-CGGCGGCG-AGUGGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 24590 0.66 0.861295
Target:  5'- gCGUGUcGUCGCCGC-CACCG-CCg- -3'
miRNA:   3'- aGUACGaCGGCGGCGaGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 192701 0.66 0.87571
Target:  5'- aUCGUuaUGCUGCCGUgUACCAUCa-- -3'
miRNA:   3'- -AGUAcgACGGCGGCGaGUGGUAGgag -5'
15676 5' -58.1 NC_004065.1 + 118237 0.66 0.87571
Target:  5'- uUCAuUGUUaCUGCCGUcuucgucgucaUCAUCAUCCUCg -3'
miRNA:   3'- -AGU-ACGAcGGCGGCG-----------AGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 207969 0.66 0.87571
Target:  5'- -aGUGCUcgggaGCCGCCaGCuUCAUgAUCUUCa -3'
miRNA:   3'- agUACGA-----CGGCGG-CG-AGUGgUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 118183 0.66 0.864242
Target:  5'- gUCAcgGCUGCCGCCGUUCgguugGcgcggcugacgcauuCCGUCgUCg -3'
miRNA:   3'- -AGUa-CGACGGCGGCGAG-----U---------------GGUAGgAG- -5'
15676 5' -58.1 NC_004065.1 + 40195 0.66 0.889303
Target:  5'- cUCAgaGCc-CUGCCGUUCACCAUCUUg -3'
miRNA:   3'- -AGUa-CGacGGCGGCGAGUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 68875 0.66 0.861295
Target:  5'- ---aGCgacGCCaGCUGCUCGCUGUCCa- -3'
miRNA:   3'- aguaCGa--CGG-CGGCGAGUGGUAGGag -5'
15676 5' -58.1 NC_004065.1 + 195331 0.66 0.861295
Target:  5'- gUC-UGC-GCCGCgCGCUCGCCcgaCCUg -3'
miRNA:   3'- -AGuACGaCGGCG-GCGAGUGGua-GGAg -5'
15676 5' -58.1 NC_004065.1 + 51155 0.66 0.861295
Target:  5'- cCGUGCcugGUgGCgGUggagUACCGUCCUCg -3'
miRNA:   3'- aGUACGa--CGgCGgCGa---GUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 47590 0.66 0.898312
Target:  5'- cUCAUGUUGgccauccguugccccCCGCCGCggAUCggCCUCa -3'
miRNA:   3'- -AGUACGAC---------------GGCGGCGagUGGuaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 211099 0.66 0.889303
Target:  5'- --cUGCUGcCCGCCGuCUCGCC-UCg-- -3'
miRNA:   3'- aguACGAC-GGCGGC-GAGUGGuAGgag -5'
15676 5' -58.1 NC_004065.1 + 6131 0.66 0.889303
Target:  5'- ------cGCCGCCGC-CGCCAgcUCCUa -3'
miRNA:   3'- aguacgaCGGCGGCGaGUGGU--AGGAg -5'
15676 5' -58.1 NC_004065.1 + 192378 0.66 0.860553
Target:  5'- ---gGCgGCCGUCGCUuguuucuuccugcCGCgAUCCUCg -3'
miRNA:   3'- aguaCGaCGGCGGCGA-------------GUGgUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 34198 0.66 0.895781
Target:  5'- aCggGCUcGagCGCCGuCUCACCGUCC-Ca -3'
miRNA:   3'- aGuaCGA-Cg-GCGGC-GAGUGGUAGGaG- -5'
15676 5' -58.1 NC_004065.1 + 200804 0.66 0.861295
Target:  5'- uUCccGCUGCCGCCcgucgccCUCGCCAUggacgcCCUg -3'
miRNA:   3'- -AGuaCGACGGCGGc------GAGUGGUA------GGAg -5'
15676 5' -58.1 NC_004065.1 + 96962 0.66 0.861295
Target:  5'- gUC-UGCUGCCGCgccugcugCGCcgGCCGUCCgUCg -3'
miRNA:   3'- -AGuACGACGGCG--------GCGagUGGUAGG-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.