miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 5' -58.1 NC_004065.1 + 6131 0.66 0.889303
Target:  5'- ------cGCCGCCGC-CGCCAgcUCCUa -3'
miRNA:   3'- aguacgaCGGCGGCGaGUGGU--AGGAg -5'
15676 5' -58.1 NC_004065.1 + 18326 0.68 0.787505
Target:  5'- --cUGCggcgGUCGCUGC-CGCCAUCgUCg -3'
miRNA:   3'- aguACGa---CGGCGGCGaGUGGUAGgAG- -5'
15676 5' -58.1 NC_004065.1 + 21500 0.72 0.58438
Target:  5'- ---cGCUGuuGCCGCaCAUgAUCCUCu -3'
miRNA:   3'- aguaCGACggCGGCGaGUGgUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 22239 0.67 0.813564
Target:  5'- gUcgGCgugGCCGUgGCggcccUCACCGUCCUg -3'
miRNA:   3'- aGuaCGa--CGGCGgCG-----AGUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 24310 1.1 0.002115
Target:  5'- cUCAUGCUGCCGCCGCUCACCAUCCUCa -3'
miRNA:   3'- -AGUACGACGGCGGCGAGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 24590 0.66 0.861295
Target:  5'- gCGUGUcGUCGCCGC-CACCG-CCg- -3'
miRNA:   3'- aGUACGaCGGCGGCGaGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 24777 0.7 0.683513
Target:  5'- gUCGUcGCUGCCGCCGC-CAUCuuggggCCg- -3'
miRNA:   3'- -AGUA-CGACGGCGGCGaGUGGua----GGag -5'
15676 5' -58.1 NC_004065.1 + 27531 0.71 0.633969
Target:  5'- gUCGgcgGC-GCCGCCGgUCucuUCGUCCUCg -3'
miRNA:   3'- -AGUa--CGaCGGCGGCgAGu--GGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 27628 0.68 0.76946
Target:  5'- --cUGCUGCUGCUGCU-GCCGgcUCUUCu -3'
miRNA:   3'- aguACGACGGCGGCGAgUGGU--AGGAG- -5'
15676 5' -58.1 NC_004065.1 + 27655 0.7 0.683513
Target:  5'- -gGUGCUGCgGCCcgucaucaaGCUaGCCAUCCUg -3'
miRNA:   3'- agUACGACGgCGG---------CGAgUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 30219 0.69 0.748141
Target:  5'- ---cGCcGCCGCCGCcagCACCGguccccgaaaagucUCCUCc -3'
miRNA:   3'- aguaCGaCGGCGGCGa--GUGGU--------------AGGAG- -5'
15676 5' -58.1 NC_004065.1 + 30297 0.66 0.891921
Target:  5'- ---cGCUGCCGCUGUccucguucgugcccgUCACCA-CCg- -3'
miRNA:   3'- aguaCGACGGCGGCG---------------AGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 33217 0.67 0.813564
Target:  5'- gUCAUGCU-CCGCCGCgacgucgaCGCCcgcAUCCg- -3'
miRNA:   3'- -AGUACGAcGGCGGCGa-------GUGG---UAGGag -5'
15676 5' -58.1 NC_004065.1 + 34198 0.66 0.895781
Target:  5'- aCggGCUcGagCGCCGuCUCACCGUCC-Ca -3'
miRNA:   3'- aGuaCGA-Cg-GCGGC-GAGUGGUAGGaG- -5'
15676 5' -58.1 NC_004065.1 + 36393 0.77 0.323096
Target:  5'- ---cGCUGCCGCCGCcacuuUCGCUuucAUCCUCu -3'
miRNA:   3'- aguaCGACGGCGGCG-----AGUGG---UAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 36430 0.71 0.64391
Target:  5'- uUCcUGCUGCCGUCGCU--UCGUCCg- -3'
miRNA:   3'- -AGuACGACGGCGGCGAguGGUAGGag -5'
15676 5' -58.1 NC_004065.1 + 37617 0.68 0.787505
Target:  5'- gUCAUGCUGUacgGCUcacagGC-CACCGUCCUg -3'
miRNA:   3'- -AGUACGACGg--CGG-----CGaGUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 40195 0.66 0.889303
Target:  5'- cUCAgaGCc-CUGCCGUUCACCAUCUUg -3'
miRNA:   3'- -AGUa-CGacGGCGGCGAGUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 41725 0.66 0.861295
Target:  5'- cCcgGC-GCaCGCUGCUUACCAUagUCUCg -3'
miRNA:   3'- aGuaCGaCG-GCGGCGAGUGGUA--GGAG- -5'
15676 5' -58.1 NC_004065.1 + 43871 0.68 0.787505
Target:  5'- uUCGUGuCUggaaccGCCGCCGCUCuCUuUCCUa -3'
miRNA:   3'- -AGUAC-GA------CGGCGGCGAGuGGuAGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.