miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 5' -58.1 NC_004065.1 + 170260 0.71 0.614088
Target:  5'- cCGUgGCcGCCGCCGC-CACCAUCg-- -3'
miRNA:   3'- aGUA-CGaCGGCGGCGaGUGGUAGgag -5'
15676 5' -58.1 NC_004065.1 + 170468 0.73 0.516464
Target:  5'- ---cGCUGCCGCCGCagACCGcucggcgagcUCUUCg -3'
miRNA:   3'- aguaCGACGGCGGCGagUGGU----------AGGAG- -5'
15676 5' -58.1 NC_004065.1 + 97700 0.73 0.525996
Target:  5'- ---cGCUGCCGCCGC-CGCCcgggcuGUCCa- -3'
miRNA:   3'- aguaCGACGGCGGCGaGUGG------UAGGag -5'
15676 5' -58.1 NC_004065.1 + 128146 0.72 0.554963
Target:  5'- gUCAUGCUGgCGUuaCGCUCGCCGggCCg- -3'
miRNA:   3'- -AGUACGACgGCG--GCGAGUGGUa-GGag -5'
15676 5' -58.1 NC_004065.1 + 135100 0.72 0.564727
Target:  5'- gUcgGCUGCUGCa--UCAUCAUCCUCa -3'
miRNA:   3'- aGuaCGACGGCGgcgAGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 21500 0.72 0.58438
Target:  5'- ---cGCUGuuGCCGCaCAUgAUCCUCu -3'
miRNA:   3'- aguaCGACggCGGCGaGUGgUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 122498 0.71 0.594259
Target:  5'- gCAgcuggGCgGUCGCCGCgcgCACC-UCCUCg -3'
miRNA:   3'- aGUa----CGaCGGCGGCGa--GUGGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 117462 0.71 0.594259
Target:  5'- gUCcgGCUccGCgGCCGCUCGCCG-CCa- -3'
miRNA:   3'- -AGuaCGA--CGgCGGCGAGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 90157 0.71 0.604164
Target:  5'- cCGUcCUGCCGCCgGCUCcGCCG-CCUCc -3'
miRNA:   3'- aGUAcGACGGCGG-CGAG-UGGUaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 195426 0.73 0.497617
Target:  5'- ---cGCUcCCGCCGCgUCGCCGUCgUCg -3'
miRNA:   3'- aguaCGAcGGCGGCG-AGUGGUAGgAG- -5'
15676 5' -58.1 NC_004065.1 + 225918 0.74 0.479084
Target:  5'- uUC-UGCUGuuGCCGCUUcCCGUCgUCu -3'
miRNA:   3'- -AGuACGACggCGGCGAGuGGUAGgAG- -5'
15676 5' -58.1 NC_004065.1 + 221269 0.74 0.443079
Target:  5'- aUAUGaaccCUGCCGCCGC-CACCAcggCCUCc -3'
miRNA:   3'- aGUAC----GACGGCGGCGaGUGGUa--GGAG- -5'
15676 5' -58.1 NC_004065.1 + 45211 0.78 0.263585
Target:  5'- ---cGCUGCCGCCaccgccaccguuGCgUCACCGUCCUCc -3'
miRNA:   3'- aguaCGACGGCGG------------CG-AGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 73694 0.78 0.269732
Target:  5'- --cUGCUGCCGCCGCUUccuCC-UCCUCc -3'
miRNA:   3'- aguACGACGGCGGCGAGu--GGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 36393 0.77 0.323096
Target:  5'- ---cGCUGCCGCCGCcacuuUCGCUuucAUCCUCu -3'
miRNA:   3'- aguaCGACGGCGGCG-----AGUGG---UAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 96857 0.76 0.360262
Target:  5'- ---cGCUGUCGCCGCgggCGCCGUUCUg -3'
miRNA:   3'- aguaCGACGGCGGCGa--GUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 194466 0.76 0.360262
Target:  5'- gCAcgGCggcGCCGCCGCUCACgCcUCCUCu -3'
miRNA:   3'- aGUa-CGa--CGGCGGCGAGUG-GuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 113714 0.75 0.392073
Target:  5'- ---cGCUGCCGCCGCcgaCGCCGacaCCUCg -3'
miRNA:   3'- aguaCGACGGCGGCGa--GUGGUa--GGAG- -5'
15676 5' -58.1 NC_004065.1 + 164700 0.75 0.392073
Target:  5'- --cUGCUGCCGCCGC-CGCCG-CCg- -3'
miRNA:   3'- aguACGACGGCGGCGaGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 149227 0.75 0.417101
Target:  5'- cUCccGCUGCCGCCGC-CGCCG-CCg- -3'
miRNA:   3'- -AGuaCGACGGCGGCGaGUGGUaGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.