miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 5' -58.1 NC_004065.1 + 24310 1.1 0.002115
Target:  5'- cUCAUGCUGCCGCCGCUCACCAUCCUCa -3'
miRNA:   3'- -AGUACGACGGCGGCGAGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 73736 0.8 0.218441
Target:  5'- cCAcUGCUGCCGCCGCUacuCCcgCCUCc -3'
miRNA:   3'- aGU-ACGACGGCGGCGAgu-GGuaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 45211 0.78 0.263585
Target:  5'- ---cGCUGCCGCCaccgccaccguuGCgUCACCGUCCUCc -3'
miRNA:   3'- aguaCGACGGCGG------------CG-AGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 73694 0.78 0.269732
Target:  5'- --cUGCUGCCGCCGCUUccuCC-UCCUCc -3'
miRNA:   3'- aguACGACGGCGGCGAGu--GGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 36393 0.77 0.323096
Target:  5'- ---cGCUGCCGCCGCcacuuUCGCUuucAUCCUCu -3'
miRNA:   3'- aguaCGACGGCGGCG-----AGUGG---UAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 130726 0.77 0.330295
Target:  5'- cCAUGgUGCCGuCCGg-CGCCAUCCUCc -3'
miRNA:   3'- aGUACgACGGC-GGCgaGUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 96857 0.76 0.360262
Target:  5'- ---cGCUGUCGCCGCgggCGCCGUUCUg -3'
miRNA:   3'- aguaCGACGGCGGCGa--GUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 194466 0.76 0.360262
Target:  5'- gCAcgGCggcGCCGCCGCUCACgCcUCCUCu -3'
miRNA:   3'- aGUa-CGa--CGGCGGCGAGUG-GuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 117403 0.76 0.368043
Target:  5'- ---cGCUGUCgguGCCGUUCACCGUCCUg -3'
miRNA:   3'- aguaCGACGG---CGGCGAGUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 56975 0.76 0.37594
Target:  5'- aCAgcUGCUGCCGCCGC-CGCCG-CCg- -3'
miRNA:   3'- aGU--ACGACGGCGGCGaGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 98660 0.75 0.392073
Target:  5'- cUCAUGCcGCCGCCacuCUCAUCGcccUCCUCg -3'
miRNA:   3'- -AGUACGaCGGCGGc--GAGUGGU---AGGAG- -5'
15676 5' -58.1 NC_004065.1 + 164700 0.75 0.392073
Target:  5'- --cUGCUGCCGCCGC-CGCCG-CCg- -3'
miRNA:   3'- aguACGACGGCGGCGaGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 113714 0.75 0.392073
Target:  5'- ---cGCUGCCGCCGCcgaCGCCGacaCCUCg -3'
miRNA:   3'- aguaCGACGGCGGCGa--GUGGUa--GGAG- -5'
15676 5' -58.1 NC_004065.1 + 163889 0.75 0.400307
Target:  5'- ---cGCUGCCGCCGC-CGCCGcCgCUCg -3'
miRNA:   3'- aguaCGACGGCGGCGaGUGGUaG-GAG- -5'
15676 5' -58.1 NC_004065.1 + 62337 0.75 0.40865
Target:  5'- ---cGCUGCCGCUGCcgUCGCCccugaauccgaAUCCUCa -3'
miRNA:   3'- aguaCGACGGCGGCG--AGUGG-----------UAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 149227 0.75 0.417101
Target:  5'- cUCccGCUGCCGCCGC-CGCCG-CCg- -3'
miRNA:   3'- -AGuaCGACGGCGGCGaGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 121148 0.74 0.434317
Target:  5'- -gGUGCUGUCGCCGCgagaCGCCGcCCUg -3'
miRNA:   3'- agUACGACGGCGGCGa---GUGGUaGGAg -5'
15676 5' -58.1 NC_004065.1 + 221269 0.74 0.443079
Target:  5'- aUAUGaaccCUGCCGCCGC-CACCAcggCCUCc -3'
miRNA:   3'- aGUAC----GACGGCGGCGaGUGGUa--GGAG- -5'
15676 5' -58.1 NC_004065.1 + 70062 0.74 0.449271
Target:  5'- uUCAUGUccGCCGUccucuucuccgccuCGCUCugCAUCCUCu -3'
miRNA:   3'- -AGUACGa-CGGCG--------------GCGAGugGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 225918 0.74 0.479084
Target:  5'- uUC-UGCUGuuGCCGCUUcCCGUCgUCu -3'
miRNA:   3'- -AGuACGACggCGGCGAGuGGUAGgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.