miRNA display CGI


Results 41 - 60 of 141 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15676 5' -58.1 NC_004065.1 + 47132 0.67 0.8461
Target:  5'- ---aGCUGCCGUCGgUCuCCGagCUCg -3'
miRNA:   3'- aguaCGACGGCGGCgAGuGGUagGAG- -5'
15676 5' -58.1 NC_004065.1 + 70352 0.67 0.8461
Target:  5'- ---cGCUGCCgguGCUGCUCGUCG-CCUCg -3'
miRNA:   3'- aguaCGACGG---CGGCGAGUGGUaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 56888 0.67 0.8461
Target:  5'- -gGUGCcgcgGCCGCUGC-CACCGcaUCCa- -3'
miRNA:   3'- agUACGa---CGGCGGCGaGUGGU--AGGag -5'
15676 5' -58.1 NC_004065.1 + 48374 0.67 0.842971
Target:  5'- aCGUGCgcgaggucccaccGCCGCCGC-CACCG-CCg- -3'
miRNA:   3'- aGUACGa------------CGGCGGCGaGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 75920 0.67 0.838224
Target:  5'- aUCA-GCccGCgGCCGcCUCGCCGaCCUCc -3'
miRNA:   3'- -AGUaCGa-CGgCGGC-GAGUGGUaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 75063 0.67 0.838224
Target:  5'- aCGUGCUcgagGCgGCUGCUCauGCCGcUCCUg -3'
miRNA:   3'- aGUACGA----CGgCGGCGAG--UGGU-AGGAg -5'
15676 5' -58.1 NC_004065.1 + 186095 0.67 0.830172
Target:  5'- aCGUGCUGCgGCCGgUCGaaugUCUCa -3'
miRNA:   3'- aGUACGACGgCGGCgAGUgguaGGAG- -5'
15676 5' -58.1 NC_004065.1 + 177830 0.67 0.830172
Target:  5'- aUCAUGC-GCgUGCCaGUagaCACCGUCCUCc -3'
miRNA:   3'- -AGUACGaCG-GCGG-CGa--GUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 59826 0.67 0.830172
Target:  5'- cCAUGCgcaGUCGCUGCccgUCGCCAUCg-- -3'
miRNA:   3'- aGUACGa--CGGCGGCG---AGUGGUAGgag -5'
15676 5' -58.1 NC_004065.1 + 154401 0.67 0.830172
Target:  5'- ---cGCcGCCGCCGC-CACCGcCCg- -3'
miRNA:   3'- aguaCGaCGGCGGCGaGUGGUaGGag -5'
15676 5' -58.1 NC_004065.1 + 112045 0.67 0.827722
Target:  5'- gUCAUcGgaGCCGUCgacggacgcguggaGCUCGCCGgcggCCUCg -3'
miRNA:   3'- -AGUA-CgaCGGCGG--------------CGAGUGGUa---GGAG- -5'
15676 5' -58.1 NC_004065.1 + 67921 0.67 0.821949
Target:  5'- ---cGCcGCCGCCGC-CGCCGcUCCcCg -3'
miRNA:   3'- aguaCGaCGGCGGCGaGUGGU-AGGaG- -5'
15676 5' -58.1 NC_004065.1 + 57764 0.67 0.821949
Target:  5'- ---cGUcGUCGCCGC-CGCCGUCgCUCu -3'
miRNA:   3'- aguaCGaCGGCGGCGaGUGGUAG-GAG- -5'
15676 5' -58.1 NC_004065.1 + 163975 0.67 0.821118
Target:  5'- ---cGCUGuCCGCCGUcagcgauggugcgUUACCAcccUCCUCu -3'
miRNA:   3'- aguaCGAC-GGCGGCG-------------AGUGGU---AGGAG- -5'
15676 5' -58.1 NC_004065.1 + 33217 0.67 0.813564
Target:  5'- gUCAUGCU-CCGCCGCgacgucgaCGCCcgcAUCCg- -3'
miRNA:   3'- -AGUACGAcGGCGGCGa-------GUGG---UAGGag -5'
15676 5' -58.1 NC_004065.1 + 65746 0.67 0.813564
Target:  5'- ---cGCUGCUGCCGCUgAgCA-CCUa -3'
miRNA:   3'- aguaCGACGGCGGCGAgUgGUaGGAg -5'
15676 5' -58.1 NC_004065.1 + 98548 0.67 0.813564
Target:  5'- ---cGCcGcCCGUCGCggCAUCGUCCUCg -3'
miRNA:   3'- aguaCGaC-GGCGGCGa-GUGGUAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 22239 0.67 0.813564
Target:  5'- gUcgGCgugGCCGUgGCggcccUCACCGUCCUg -3'
miRNA:   3'- aGuaCGa--CGGCGgCG-----AGUGGUAGGAg -5'
15676 5' -58.1 NC_004065.1 + 99176 0.68 0.805022
Target:  5'- ---aGCUGCUGCUGC--ACC-UCCUCg -3'
miRNA:   3'- aguaCGACGGCGGCGagUGGuAGGAG- -5'
15676 5' -58.1 NC_004065.1 + 154172 0.68 0.805022
Target:  5'- gCGgcgGCUGuuGCUgGCUCGCCGUCgccauCUCg -3'
miRNA:   3'- aGUa--CGACggCGG-CGAGUGGUAG-----GAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.