miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 3' -57.1 NC_004065.1 + 61591 0.67 0.887254
Target:  5'- uUCGCCCGGGucgccGcGGCUCUCGCcgUCgagUGCg -3'
miRNA:   3'- uGGUGGGCUUu----C-CCGAGAGCG--AG---ACG- -5'
15677 3' -57.1 NC_004065.1 + 123856 0.66 0.912059
Target:  5'- cGCUACCCGAAcaacccgcgcGGGcGCUCgUCGUcgaUGCu -3'
miRNA:   3'- -UGGUGGGCUU----------UCC-CGAG-AGCGag-ACG- -5'
15677 3' -57.1 NC_004065.1 + 59412 0.66 0.912059
Target:  5'- cGCgCGCCCGAucGGaCUCUCGCcgUCgucGCc -3'
miRNA:   3'- -UG-GUGGGCUuuCCcGAGAGCG--AGa--CG- -5'
15677 3' -57.1 NC_004065.1 + 88610 0.66 0.922605
Target:  5'- gGCCGCggaCGAGAGcGGUcccauguacgauuUCUCcGCUCUGUu -3'
miRNA:   3'- -UGGUGg--GCUUUC-CCG-------------AGAG-CGAGACG- -5'
15677 3' -57.1 NC_004065.1 + 42983 0.66 0.923138
Target:  5'- gGCCGCCgcgcugCGAucacuGGGGCggaggagcgCUCGCcgaccUCUGCa -3'
miRNA:   3'- -UGGUGG------GCUu----UCCCGa--------GAGCG-----AGACG- -5'
15677 3' -57.1 NC_004065.1 + 24815 0.66 0.923138
Target:  5'- gACCGcgcgauCCCGAcgAGGGGCUCgucucCGCUgccgucgucgCUGCc -3'
miRNA:   3'- -UGGU------GGGCU--UUCCCGAGa----GCGA----------GACG- -5'
15677 3' -57.1 NC_004065.1 + 123734 0.66 0.928341
Target:  5'- gACCaacaACCCGu-GGGGCUCgcagcgcgggUCGCUggGCg -3'
miRNA:   3'- -UGG----UGGGCuuUCCCGAG----------AGCGAgaCG- -5'
15677 3' -57.1 NC_004065.1 + 39832 0.66 0.932832
Target:  5'- gAUCugCCGGAucucuccGGGGUUCUCGCg---- -3'
miRNA:   3'- -UGGugGGCUU-------UCCCGAGAGCGagacg -5'
15677 3' -57.1 NC_004065.1 + 184400 0.68 0.866422
Target:  5'- aACCuuACCCGGccugGGGGGCUC-CGUUCaccGCu -3'
miRNA:   3'- -UGG--UGGGCU----UUCCCGAGaGCGAGa--CG- -5'
15677 3' -57.1 NC_004065.1 + 57496 0.68 0.859077
Target:  5'- gACCGgcgucUUCGAGGGGGUUUUCGCUgUGa -3'
miRNA:   3'- -UGGU-----GGGCUUUCCCGAGAGCGAgACg -5'
15677 3' -57.1 NC_004065.1 + 200146 0.68 0.843813
Target:  5'- cACC-CCCgGGGAGGGCgaccggC-CGCUCgUGCu -3'
miRNA:   3'- -UGGuGGG-CUUUCCCGa-----GaGCGAG-ACG- -5'
15677 3' -57.1 NC_004065.1 + 82755 0.78 0.322176
Target:  5'- gGCCACCgaUGAGGGGG-UCUCGgUCUGCg -3'
miRNA:   3'- -UGGUGG--GCUUUCCCgAGAGCgAGACG- -5'
15677 3' -57.1 NC_004065.1 + 139077 0.78 0.33662
Target:  5'- -gCGCCCGAAacagguAGGGUUCUgacacaCGCUCUGCg -3'
miRNA:   3'- ugGUGGGCUU------UCCCGAGA------GCGAGACG- -5'
15677 3' -57.1 NC_004065.1 + 195062 0.74 0.514624
Target:  5'- cACCGCCaCGGcguucAGGGGCUCgacgaUCGCcCUGCg -3'
miRNA:   3'- -UGGUGG-GCU-----UUCCCGAG-----AGCGaGACG- -5'
15677 3' -57.1 NC_004065.1 + 87642 0.71 0.682113
Target:  5'- gGCCGCUCGAucaaccggcggaugcAGGGC-CU-GCUCUGCg -3'
miRNA:   3'- -UGGUGGGCUu--------------UCCCGaGAgCGAGACG- -5'
15677 3' -57.1 NC_004065.1 + 125958 0.71 0.720036
Target:  5'- cCCGCCCcAGGGGGaugaUCgggucagggCGCUCUGCc -3'
miRNA:   3'- uGGUGGGcUUUCCCg---AGa--------GCGAGACG- -5'
15677 3' -57.1 NC_004065.1 + 53060 0.7 0.757808
Target:  5'- uUUugCCGAGGgcGGGCg--CGCUCUGCu -3'
miRNA:   3'- uGGugGGCUUU--CCCGagaGCGAGACG- -5'
15677 3' -57.1 NC_004065.1 + 151985 0.69 0.793912
Target:  5'- aGCgGCUCucGAGGGC-CUCGgaCUGCg -3'
miRNA:   3'- -UGgUGGGcuUUCCCGaGAGCgaGACG- -5'
15677 3' -57.1 NC_004065.1 + 201444 0.69 0.810326
Target:  5'- cGCCGCCCGAGccGGGacgcgccGCUUggugucggCGCUgCUGCg -3'
miRNA:   3'- -UGGUGGGCUU--UCC-------CGAGa-------GCGA-GACG- -5'
15677 3' -57.1 NC_004065.1 + 188711 0.68 0.843813
Target:  5'- ---uUCCGAGAaGGGCUCUCuCUCUGa -3'
miRNA:   3'- ugguGGGCUUU-CCCGAGAGcGAGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.