miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 5' -60.8 NC_004065.1 + 103784 0.66 0.843654
Target:  5'- aGCaGCUGGUgaucuccGCGAGcg--CCGCGCCGu -3'
miRNA:   3'- -CG-CGACCG-------CGCUCuaugGGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 128463 0.66 0.836821
Target:  5'- cCGCgGGCGCGAucaGGcUACCacugccaGCGCCGc -3'
miRNA:   3'- cGCGaCCGCGCU---CU-AUGGg------CGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 224537 0.66 0.829076
Target:  5'- cGUGCUGcGgGCGAGAcguggaugucGCCCGUGuaGGc -3'
miRNA:   3'- -CGCGAC-CgCGCUCUa---------UGGGCGCggCC- -5'
15677 5' -60.8 NC_004065.1 + 66554 0.66 0.829076
Target:  5'- cGCGCgGcGUGCGAGucguuCUCGuCGCUGGc -3'
miRNA:   3'- -CGCGaC-CGCGCUCuau--GGGC-GCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 30888 0.66 0.828293
Target:  5'- aGCGCccgcagGGCGuCGGGGUcgcACUCGUguccgucgacaucGCCGGg -3'
miRNA:   3'- -CGCGa-----CCGC-GCUCUA---UGGGCG-------------CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 193516 0.66 0.821176
Target:  5'- --cCUGGCG-GAGAaaUGuaauuugucUCCGCGCCGGg -3'
miRNA:   3'- cgcGACCGCgCUCU--AU---------GGGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 26360 0.66 0.847392
Target:  5'- gGCGCUGGCGacggcggcggggauaCGGGGcguuccccaUGCCCcCGCCu- -3'
miRNA:   3'- -CGCGACCGC---------------GCUCU---------AUGGGcGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 229409 0.66 0.829076
Target:  5'- cUGCcGG-GCGAGGgcGCCC-CGCCGGc -3'
miRNA:   3'- cGCGaCCgCGCUCUa-UGGGcGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 85904 0.66 0.813126
Target:  5'- gGCGCUGGCgGUGAcGAU-CUgGUGCCu- -3'
miRNA:   3'- -CGCGACCG-CGCU-CUAuGGgCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 40243 0.66 0.829076
Target:  5'- aGCGUUGGCgGCGGuGUACagacaccgucaaCgGCGUCGGg -3'
miRNA:   3'- -CGCGACCG-CGCUcUAUG------------GgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 97789 0.66 0.813126
Target:  5'- gGCGCUGGCGCu-GA---UCGCGUCGu -3'
miRNA:   3'- -CGCGACCGCGcuCUaugGGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 126506 0.67 0.770878
Target:  5'- cGCGCUGG-GCGGcucGAU-CCC-CGCaCGGg -3'
miRNA:   3'- -CGCGACCgCGCU---CUAuGGGcGCG-GCC- -5'
15677 5' -60.8 NC_004065.1 + 43350 0.67 0.770878
Target:  5'- gGCGCcgGGuCGCG-GAUGCCCGgacCGuCCGa -3'
miRNA:   3'- -CGCGa-CC-GCGCuCUAUGGGC---GC-GGCc -5'
15677 5' -60.8 NC_004065.1 + 125378 0.67 0.762078
Target:  5'- uGgGCgacGGCGCGGuGGUGCCgGCGgCGu -3'
miRNA:   3'- -CgCGa--CCGCGCU-CUAUGGgCGCgGCc -5'
15677 5' -60.8 NC_004065.1 + 173712 0.67 0.779571
Target:  5'- gGUGCUGGCGuCGAGcg--CCGCcaCCGGu -3'
miRNA:   3'- -CGCGACCGC-GCUCuaugGGCGc-GGCC- -5'
15677 5' -60.8 NC_004065.1 + 136511 0.67 0.779571
Target:  5'- aUGgaGGCgGCGAGAcaucuCCCGuCGUCGGu -3'
miRNA:   3'- cGCgaCCG-CGCUCUau---GGGC-GCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 177038 0.67 0.774369
Target:  5'- cGCGcCUcgccucaaaccuuggGGCGCGAGGagucuCCCGCGUCa- -3'
miRNA:   3'- -CGC-GA---------------CCGCGCUCUau---GGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 66395 0.67 0.779571
Target:  5'- -aGCUGGCGCcGGuccgcgGCCCagcGCGCCa- -3'
miRNA:   3'- cgCGACCGCGcUCua----UGGG---CGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 27233 0.67 0.787297
Target:  5'- uGCuGCUGGCguuguuuuugGCGAGcuccggaGCCCGCcgcggccGCCGGa -3'
miRNA:   3'- -CG-CGACCG----------CGCUCua-----UGGGCG-------CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 90117 0.67 0.770878
Target:  5'- cCGCUGGCGCcgccggccgGAGGc-CCCGCgGCCa- -3'
miRNA:   3'- cGCGACCGCG---------CUCUauGGGCG-CGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.