miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 5' -60.8 NC_004065.1 + 76376 0.66 0.813126
Target:  5'- cGCGCcGGCGCcgccgcGGAUgaGCUCGCcGCCGu -3'
miRNA:   3'- -CGCGaCCGCGc-----UCUA--UGGGCG-CGGCc -5'
15677 5' -60.8 NC_004065.1 + 42673 0.66 0.804934
Target:  5'- aCGCUGaCGCGaAGcUGCUCGCGuUCGGa -3'
miRNA:   3'- cGCGACcGCGC-UCuAUGGGCGC-GGCC- -5'
15677 5' -60.8 NC_004065.1 + 113321 0.66 0.804934
Target:  5'- cGCGCcGGaCGCGGGAUcgaugAUCUaCGUCGGg -3'
miRNA:   3'- -CGCGaCC-GCGCUCUA-----UGGGcGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 143117 0.66 0.804934
Target:  5'- cGCGCgccgccgaGG-GCGAGAccggcgccgcgACCUGCGUCGGu -3'
miRNA:   3'- -CGCGa-------CCgCGCUCUa----------UGGGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 27637 0.66 0.813126
Target:  5'- gGCGCUGcgcuGCGCGGGGgugcugcgGCCCGUcaucaagcuaGCCa- -3'
miRNA:   3'- -CGCGAC----CGCGCUCUa-------UGGGCG----------CGGcc -5'
15677 5' -60.8 NC_004065.1 + 17800 0.66 0.821176
Target:  5'- cGCGuUUGGCGCGAu---CCCGCGUg-- -3'
miRNA:   3'- -CGC-GACCGCGCUcuauGGGCGCGgcc -5'
15677 5' -60.8 NC_004065.1 + 35470 0.66 0.821176
Target:  5'- cGCGCU-GCGCGG--UGCCCGUGacgacguucaCGGg -3'
miRNA:   3'- -CGCGAcCGCGCUcuAUGGGCGCg---------GCC- -5'
15677 5' -60.8 NC_004065.1 + 68262 0.66 0.821176
Target:  5'- gGCuGCUGGCGuCGaAGAUcCUgGCGCUGu -3'
miRNA:   3'- -CG-CGACCGC-GC-UCUAuGGgCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 193516 0.66 0.821176
Target:  5'- --cCUGGCG-GAGAaaUGuaauuugucUCCGCGCCGGg -3'
miRNA:   3'- cgcGACCGCgCUCU--AU---------GGGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 38035 0.66 0.836821
Target:  5'- -gGCUGGCGCuGAG-UGCCa--GUCGGu -3'
miRNA:   3'- cgCGACCGCG-CUCuAUGGgcgCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 146040 0.66 0.812313
Target:  5'- cGUGCaUGaggaucuGUGCGAGc-GCCCGCGaCCGGc -3'
miRNA:   3'- -CGCG-AC-------CGCGCUCuaUGGGCGC-GGCC- -5'
15677 5' -60.8 NC_004065.1 + 26360 0.66 0.847392
Target:  5'- gGCGCUGGCGacggcggcggggauaCGGGGcguuccccaUGCCCcCGCCu- -3'
miRNA:   3'- -CGCGACCGC---------------GCUCU---------AUGGGcGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 103784 0.66 0.843654
Target:  5'- aGCaGCUGGUgaucuccGCGAGcg--CCGCGCCGu -3'
miRNA:   3'- -CG-CGACCG-------CGCUCuaugGGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 224537 0.66 0.829076
Target:  5'- cGUGCUGcGgGCGAGAcguggaugucGCCCGUGuaGGc -3'
miRNA:   3'- -CGCGAC-CgCGCUCUa---------UGGGCGCggCC- -5'
15677 5' -60.8 NC_004065.1 + 138020 0.66 0.836821
Target:  5'- uCGCUuGCGacaGaAGAUACCCaCGUCGGg -3'
miRNA:   3'- cGCGAcCGCg--C-UCUAUGGGcGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 127460 0.66 0.844405
Target:  5'- aCGCugaUGGcCGCGGGAcccgACCCcgGCGCCa- -3'
miRNA:   3'- cGCG---ACC-GCGCUCUa---UGGG--CGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 98670 0.66 0.844405
Target:  5'- uUGCUGaCGgGGGGgacGCCCGCGCgGa -3'
miRNA:   3'- cGCGACcGCgCUCUa--UGGGCGCGgCc -5'
15677 5' -60.8 NC_004065.1 + 128463 0.66 0.836821
Target:  5'- cCGCgGGCGCGAucaGGcUACCacugccaGCGCCGc -3'
miRNA:   3'- cGCGaCCGCGCU---CU-AUGGg------CGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 66554 0.66 0.829076
Target:  5'- cGCGCgGcGUGCGAGucguuCUCGuCGCUGGc -3'
miRNA:   3'- -CGCGaC-CGCGCUCuau--GGGC-GCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 126288 0.66 0.804934
Target:  5'- cGUGCUGaagguGgGCGAGcgGCUCgugGCGCUGGa -3'
miRNA:   3'- -CGCGAC-----CgCGCUCuaUGGG---CGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.