miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 5' -60.8 NC_004065.1 + 25031 1.1 0.001616
Target:  5'- uGCGCUGGCGCGAGAUACCCGCGCCGGc -3'
miRNA:   3'- -CGCGACCGCGCUCUAUGGGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 110841 0.8 0.169224
Target:  5'- aGUGCggGGCGCGGGccGCCCGCGUCGa -3'
miRNA:   3'- -CGCGa-CCGCGCUCuaUGGGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 125628 0.77 0.279524
Target:  5'- gGCGCUGGaGCugaccaAGGUGCgCGCGCCGGa -3'
miRNA:   3'- -CGCGACCgCGc-----UCUAUGgGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 66130 0.76 0.285698
Target:  5'- gGCGCUGGCGCGcuGGGccgcggACCgGCGCCa- -3'
miRNA:   3'- -CGCGACCGCGC--UCUa-----UGGgCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 85790 0.75 0.35336
Target:  5'- gGCGaccgaGGCGCGAGA-ACCgGCGUCGGc -3'
miRNA:   3'- -CGCga---CCGCGCUCUaUGGgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 32927 0.74 0.375751
Target:  5'- gGCGCU-GCGCGAGAa--CCGCGCCc- -3'
miRNA:   3'- -CGCGAcCGCGCUCUaugGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 91127 0.74 0.375751
Target:  5'- uCGCUGaGCGCGGGGUcguagaACCCGUGCUcgaGGa -3'
miRNA:   3'- cGCGAC-CGCGCUCUA------UGGGCGCGG---CC- -5'
15677 5' -60.8 NC_004065.1 + 123912 0.73 0.456964
Target:  5'- aGCGCgccacGUGCGAGGUGauCCUGaCGCCGGu -3'
miRNA:   3'- -CGCGac---CGCGCUCUAU--GGGC-GCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 149904 0.72 0.473441
Target:  5'- cGCGCUgcGGCGCGuGcaggGCCUgccgacgGCGCCGGu -3'
miRNA:   3'- -CGCGA--CCGCGCuCua--UGGG-------CGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 195493 0.72 0.474317
Target:  5'- uCGCUGuCGCGGGA-GCCCGCGUCa- -3'
miRNA:   3'- cGCGACcGCGCUCUaUGGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 142402 0.72 0.48135
Target:  5'- cGCGCUcGCGCGGGccaucuuucgccUGCCggCGCGCCGGc -3'
miRNA:   3'- -CGCGAcCGCGCUCu-----------AUGG--GCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 120560 0.72 0.500945
Target:  5'- gGCGgUcGGCGCGAGcgGgcgggaccuCCgGCGCCGGu -3'
miRNA:   3'- -CGCgA-CCGCGCUCuaU---------GGgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 92305 0.72 0.500945
Target:  5'- aGCGC--GCGUGAGAUGCCucgagCGCGCCa- -3'
miRNA:   3'- -CGCGacCGCGCUCUAUGG-----GCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 126488 0.72 0.509967
Target:  5'- aUGUUGGCGCGcuGcACCCGCGUCGc -3'
miRNA:   3'- cGCGACCGCGCucUaUGGGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 38420 0.71 0.52821
Target:  5'- cCGCUGGCGCG-GAU-CgCCGCGUCu- -3'
miRNA:   3'- cGCGACCGCGCuCUAuG-GGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 128259 0.71 0.52821
Target:  5'- -aGUUGGCGCGGcgggccaccucGGUgACCCGCGgCGGc -3'
miRNA:   3'- cgCGACCGCGCU-----------CUA-UGGGCGCgGCC- -5'
15677 5' -60.8 NC_004065.1 + 69393 0.71 0.536499
Target:  5'- gGCGCUGGCGgaacagcugccgaCGGGGcGCCaggugCGCGCCGa -3'
miRNA:   3'- -CGCGACCGC-------------GCUCUaUGG-----GCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 42066 0.71 0.54669
Target:  5'- gGCGCUGGUGUGGcugaccucgcuGAUgugcgcgucGCCgGCGCCGa -3'
miRNA:   3'- -CGCGACCGCGCU-----------CUA---------UGGgCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 82410 0.71 0.556007
Target:  5'- -gGCUGGUGCcucgccagGAGGUACagcguCCGCGCCGc -3'
miRNA:   3'- cgCGACCGCG--------CUCUAUG-----GGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 124460 0.71 0.556007
Target:  5'- cCGCcgacGGCGCGccGUGCCgcUGCGCCGGg -3'
miRNA:   3'- cGCGa---CCGCGCucUAUGG--GCGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.