miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 5' -60.8 NC_004065.1 + 2092 0.7 0.584212
Target:  5'- cGCGCUGcGCGCGu-AUGCCgaGCGUgGGa -3'
miRNA:   3'- -CGCGAC-CGCGCucUAUGGg-CGCGgCC- -5'
15677 5' -60.8 NC_004065.1 + 17800 0.66 0.821176
Target:  5'- cGCGuUUGGCGCGAu---CCCGCGUg-- -3'
miRNA:   3'- -CGC-GACCGCGCUcuauGGGCGCGgcc -5'
15677 5' -60.8 NC_004065.1 + 18877 0.66 0.821176
Target:  5'- gGCGgaGGCGgGGGAaACgUGgGCCuGGg -3'
miRNA:   3'- -CGCgaCCGCgCUCUaUGgGCgCGG-CC- -5'
15677 5' -60.8 NC_004065.1 + 19426 0.68 0.707437
Target:  5'- gGCGgaGGUGCcGGAgGCaCCGCGCUGc -3'
miRNA:   3'- -CGCgaCCGCGcUCUaUG-GGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 24214 0.69 0.660311
Target:  5'- aCGC-GGUugGCGAGGUuucGCUCGCGCCaGGa -3'
miRNA:   3'- cGCGaCCG--CGCUCUA---UGGGCGCGG-CC- -5'
15677 5' -60.8 NC_004065.1 + 24469 0.68 0.725951
Target:  5'- gGCaGCUcggacaugGGCGCGuAGAUgGCaCCGCcGCCGGc -3'
miRNA:   3'- -CG-CGA--------CCGCGC-UCUA-UG-GGCG-CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 24774 0.71 0.574774
Target:  5'- -gGCcGGCGCGGGuauCUCGCGCCa- -3'
miRNA:   3'- cgCGaCCGCGCUCuauGGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 25031 1.1 0.001616
Target:  5'- uGCGCUGGCGCGAGAUACCCGCGCCGGc -3'
miRNA:   3'- -CGCGACCGCGCUCUAUGGGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 26360 0.66 0.847392
Target:  5'- gGCGCUGGCGacggcggcggggauaCGGGGcguuccccaUGCCCcCGCCu- -3'
miRNA:   3'- -CGCGACCGC---------------GCUCU---------AUGGGcGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 27233 0.67 0.787297
Target:  5'- uGCuGCUGGCguuguuuuugGCGAGcuccggaGCCCGCcgcggccGCCGGa -3'
miRNA:   3'- -CG-CGACCG----------CGCUCua-----UGGGCG-------CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 27637 0.66 0.813126
Target:  5'- gGCGCUGcgcuGCGCGGGGgugcugcgGCCCGUcaucaagcuaGCCa- -3'
miRNA:   3'- -CGCGAC----CGCGCUCUa-------UGGGCG----------CGGcc -5'
15677 5' -60.8 NC_004065.1 + 30888 0.66 0.828293
Target:  5'- aGCGCccgcagGGCGuCGGGGUcgcACUCGUguccgucgacaucGCCGGg -3'
miRNA:   3'- -CGCGa-----CCGC-GCUCUA---UGGGCG-------------CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 31688 0.69 0.688702
Target:  5'- aGCGaaGGUGCGucGGUGCCCgagcGUGCCGa -3'
miRNA:   3'- -CGCgaCCGCGCu-CUAUGGG----CGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 32927 0.74 0.375751
Target:  5'- gGCGCU-GCGCGAGAa--CCGCGCCc- -3'
miRNA:   3'- -CGCGAcCGCGCUCUaugGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 33622 0.67 0.762078
Target:  5'- cGCGCgcagaagaucGGCaCGAaGUACCgGCGUCGGa -3'
miRNA:   3'- -CGCGa---------CCGcGCUcUAUGGgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 35470 0.66 0.821176
Target:  5'- cGCGCU-GCGCGG--UGCCCGUGacgacguucaCGGg -3'
miRNA:   3'- -CGCGAcCGCGCUcuAUGGGCGCg---------GCC- -5'
15677 5' -60.8 NC_004065.1 + 36209 0.68 0.725951
Target:  5'- aGCaGC-GGCGCGAGuccgacgACCUGCgGCCGc -3'
miRNA:   3'- -CG-CGaCCGCGCUCua-----UGGGCG-CGGCc -5'
15677 5' -60.8 NC_004065.1 + 38035 0.66 0.836821
Target:  5'- -gGCUGGCGCuGAG-UGCCa--GUCGGu -3'
miRNA:   3'- cgCGACCGCG-CUCuAUGGgcgCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 38159 0.68 0.698093
Target:  5'- aCGCUGGaagaCGCG-GcgAUCCGCGCCa- -3'
miRNA:   3'- cGCGACC----GCGCuCuaUGGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 38420 0.71 0.52821
Target:  5'- cCGCUGGCGCG-GAU-CgCCGCGUCu- -3'
miRNA:   3'- cGCGACCGCGCuCUAuG-GGCGCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.