miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 5' -60.8 NC_004065.1 + 77980 0.69 0.688702
Target:  5'- aCGCUGGcCGCG-GcgAgCCGCcCCGGg -3'
miRNA:   3'- cGCGACC-GCGCuCuaUgGGCGcGGCC- -5'
15677 5' -60.8 NC_004065.1 + 2092 0.7 0.584212
Target:  5'- cGCGCUGcGCGCGu-AUGCCgaGCGUgGGa -3'
miRNA:   3'- -CGCGAC-CGCGCucUAUGGg-CGCGgCC- -5'
15677 5' -60.8 NC_004065.1 + 201361 0.7 0.612687
Target:  5'- cUGCU-GCGCGAGcUGCgCCuCGCCGGg -3'
miRNA:   3'- cGCGAcCGCGCUCuAUG-GGcGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 97246 0.7 0.622211
Target:  5'- gGCGCacGGCGCuucuGGcgACCuuCGCGCCGGu -3'
miRNA:   3'- -CGCGa-CCGCGc---UCuaUGG--GCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 168621 0.69 0.650798
Target:  5'- gGCuGCUGGCGCu-GGUGCCgCGggcggaGCCGGc -3'
miRNA:   3'- -CG-CGACCGCGcuCUAUGG-GCg-----CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 24214 0.69 0.660311
Target:  5'- aCGC-GGUugGCGAGGUuucGCUCGCGCCaGGa -3'
miRNA:   3'- cGCGaCCG--CGCUCUA---UGGGCGCGG-CC- -5'
15677 5' -60.8 NC_004065.1 + 133489 0.69 0.660311
Target:  5'- aGUGCUGGCGUu-GAUACguCCGCuaCGGu -3'
miRNA:   3'- -CGCGACCGCGcuCUAUG--GGCGcgGCC- -5'
15677 5' -60.8 NC_004065.1 + 93321 0.69 0.679269
Target:  5'- uGCGUcaucgUGGCGgauaaaagcuCGAGccgGCCCGCcGCCGGc -3'
miRNA:   3'- -CGCG-----ACCGC----------GCUCua-UGGGCG-CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 31688 0.69 0.688702
Target:  5'- aGCGaaGGUGCGucGGUGCCCgagcGUGCCGa -3'
miRNA:   3'- -CGCgaCCGCGCu-CUAUGGG----CGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 24774 0.71 0.574774
Target:  5'- -gGCcGGCGCGGGuauCUCGCGCCa- -3'
miRNA:   3'- cgCGaCCGCGCUCuauGGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 124460 0.71 0.556007
Target:  5'- cCGCcgacGGCGCGccGUGCCgcUGCGCCGGg -3'
miRNA:   3'- cGCGa---CCGCGCucUAUGG--GCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 42066 0.71 0.54669
Target:  5'- gGCGCUGGUGUGGcugaccucgcuGAUgugcgcgucGCCgGCGCCGa -3'
miRNA:   3'- -CGCGACCGCGCU-----------CUA---------UGGgCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 66130 0.76 0.285698
Target:  5'- gGCGCUGGCGCGcuGGGccgcggACCgGCGCCa- -3'
miRNA:   3'- -CGCGACCGCGC--UCUa-----UGGgCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 85790 0.75 0.35336
Target:  5'- gGCGaccgaGGCGCGAGA-ACCgGCGUCGGc -3'
miRNA:   3'- -CGCga---CCGCGCUCUaUGGgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 91127 0.74 0.375751
Target:  5'- uCGCUGaGCGCGGGGUcguagaACCCGUGCUcgaGGa -3'
miRNA:   3'- cGCGAC-CGCGCUCUA------UGGGCGCGG---CC- -5'
15677 5' -60.8 NC_004065.1 + 195493 0.72 0.474317
Target:  5'- uCGCUGuCGCGGGA-GCCCGCGUCa- -3'
miRNA:   3'- cGCGACcGCGCUCUaUGGGCGCGGcc -5'
15677 5' -60.8 NC_004065.1 + 142402 0.72 0.48135
Target:  5'- cGCGCUcGCGCGGGccaucuuucgccUGCCggCGCGCCGGc -3'
miRNA:   3'- -CGCGAcCGCGCUCu-----------AUGG--GCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 120560 0.72 0.500945
Target:  5'- gGCGgUcGGCGCGAGcgGgcgggaccuCCgGCGCCGGu -3'
miRNA:   3'- -CGCgA-CCGCGCUCuaU---------GGgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 126488 0.72 0.509967
Target:  5'- aUGUUGGCGCGcuGcACCCGCGUCGc -3'
miRNA:   3'- cGCGACCGCGCucUaUGGGCGCGGCc -5'
15677 5' -60.8 NC_004065.1 + 69393 0.71 0.536499
Target:  5'- gGCGCUGGCGgaacagcugccgaCGGGGcGCCaggugCGCGCCGa -3'
miRNA:   3'- -CGCGACCGC-------------GCUCUaUGG-----GCGCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.