miRNA display CGI


Results 41 - 60 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15677 5' -60.8 NC_004065.1 + 90117 0.67 0.770878
Target:  5'- cCGCUGGCGCcgccggccgGAGGc-CCCGCgGCCa- -3'
miRNA:   3'- cGCGACCGCG---------CUCUauGGGCG-CGGcc -5'
15677 5' -60.8 NC_004065.1 + 113846 0.67 0.770878
Target:  5'- cCGCgGGCGaCGAGuuuggauuUGCCCGCgGCCu- -3'
miRNA:   3'- cGCGaCCGC-GCUCu-------AUGGGCG-CGGcc -5'
15677 5' -60.8 NC_004065.1 + 126506 0.67 0.770878
Target:  5'- cGCGCUGG-GCGGcucGAU-CCC-CGCaCGGg -3'
miRNA:   3'- -CGCGACCgCGCU---CUAuGGGcGCG-GCC- -5'
15677 5' -60.8 NC_004065.1 + 43350 0.67 0.770878
Target:  5'- gGCGCcgGGuCGCG-GAUGCCCGgacCGuCCGa -3'
miRNA:   3'- -CGCGa-CC-GCGCuCUAUGGGC---GC-GGCc -5'
15677 5' -60.8 NC_004065.1 + 33622 0.67 0.762078
Target:  5'- cGCGCgcagaagaucGGCaCGAaGUACCgGCGUCGGa -3'
miRNA:   3'- -CGCGa---------CCGcGCUcUAUGGgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 188897 0.67 0.762078
Target:  5'- cCGCUGGuCGUGGugugguacGUGCUCGCcGCCGGc -3'
miRNA:   3'- cGCGACC-GCGCUc-------UAUGGGCG-CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 97506 0.67 0.762078
Target:  5'- gGCGCgaaGGuCGCcAGAagcGCCgUGCGCCGGa -3'
miRNA:   3'- -CGCGa--CC-GCGcUCUa--UGG-GCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 125378 0.67 0.762078
Target:  5'- uGgGCgacGGCGCGGuGGUGCCgGCGgCGu -3'
miRNA:   3'- -CgCGa--CCGCGCU-CUAUGGgCGCgGCc -5'
15677 5' -60.8 NC_004065.1 + 99129 0.67 0.762078
Target:  5'- aGCGCgugGGCGaCGAcGAccCCCGUuCCGGc -3'
miRNA:   3'- -CGCGa--CCGC-GCU-CUauGGGCGcGGCC- -5'
15677 5' -60.8 NC_004065.1 + 107766 0.68 0.744185
Target:  5'- -aGCUGGCcgGCGGGGgguuaggACgCCGC-CCGGa -3'
miRNA:   3'- cgCGACCG--CGCUCUa------UG-GGCGcGGCC- -5'
15677 5' -60.8 NC_004065.1 + 63313 0.68 0.744185
Target:  5'- cGCGCgacagcaGGUcCGGGAUcgucGCCucgCGCGCCGGa -3'
miRNA:   3'- -CGCGa------CCGcGCUCUA----UGG---GCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 70948 0.68 0.744185
Target:  5'- gGUGgaGGCG-GAGAUGuuggagaCgGCGCCGGa -3'
miRNA:   3'- -CGCgaCCGCgCUCUAUg------GgCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 172744 0.68 0.735106
Target:  5'- cCGUccGGUGCGAGGUGCCCGaGCUc- -3'
miRNA:   3'- cGCGa-CCGCGCUCUAUGGGCgCGGcc -5'
15677 5' -60.8 NC_004065.1 + 101798 0.68 0.725951
Target:  5'- cCGCUacccGCGCGcGuUAUCUGCGCCGGc -3'
miRNA:   3'- cGCGAc---CGCGCuCuAUGGGCGCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 36209 0.68 0.725951
Target:  5'- aGCaGC-GGCGCGAGuccgacgACCUGCgGCCGc -3'
miRNA:   3'- -CG-CGaCCGCGCUCua-----UGGGCG-CGGCc -5'
15677 5' -60.8 NC_004065.1 + 142972 0.68 0.725951
Target:  5'- aGCGa-GGCGCccaGGAccCCCGaCGCCGGg -3'
miRNA:   3'- -CGCgaCCGCGc--UCUauGGGC-GCGGCC- -5'
15677 5' -60.8 NC_004065.1 + 142666 0.68 0.725951
Target:  5'- cGCGCcGGCagGCGAaaGAUgGCCCGCGCg-- -3'
miRNA:   3'- -CGCGaCCG--CGCU--CUA-UGGGCGCGgcc -5'
15677 5' -60.8 NC_004065.1 + 24469 0.68 0.725951
Target:  5'- gGCaGCUcggacaugGGCGCGuAGAUgGCaCCGCcGCCGGc -3'
miRNA:   3'- -CG-CGA--------CCGCGC-UCUA-UG-GGCG-CGGCC- -5'
15677 5' -60.8 NC_004065.1 + 113923 0.68 0.716725
Target:  5'- -aGCUGGagaGCGAGAgggcggggaACCCGgCGCUGa -3'
miRNA:   3'- cgCGACCg--CGCUCUa--------UGGGC-GCGGCc -5'
15677 5' -60.8 NC_004065.1 + 106280 0.68 0.716725
Target:  5'- gGUGCUGGCGC-AGA-ACUCGCaCCGu -3'
miRNA:   3'- -CGCGACCGCGcUCUaUGGGCGcGGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.