miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16250 3' -56 NC_004084.1 + 57837 1.13 0.000731
Target:  5'- gCCGUCAUCUCGAGUUCCUCGGCCGGGa -3'
miRNA:   3'- -GGCAGUAGAGCUCAAGGAGCCGGCCC- -5'
16250 3' -56 NC_004084.1 + 14202 0.73 0.36991
Target:  5'- gCCGUCGgccauccgcUCgUCGAGgUCCUCaaccgagacauacuGGCCGGGa -3'
miRNA:   3'- -GGCAGU---------AG-AGCUCaAGGAG--------------CCGGCCC- -5'
16250 3' -56 NC_004084.1 + 16655 0.72 0.416381
Target:  5'- aCGUCGUC-CGGGaggUCCUCGucGCCGGc -3'
miRNA:   3'- gGCAGUAGaGCUCa--AGGAGC--CGGCCc -5'
16250 3' -56 NC_004084.1 + 1415 0.7 0.533383
Target:  5'- gCGUCGccauUCUCGGcGUcgccgUCCUCGGCCGc- -3'
miRNA:   3'- gGCAGU----AGAGCU-CA-----AGGAGCCGGCcc -5'
16250 3' -56 NC_004084.1 + 5719 0.7 0.543717
Target:  5'- aCGUCG-CUCGGGccgaggUCCUCGaUCGGGa -3'
miRNA:   3'- gGCAGUaGAGCUCa-----AGGAGCcGGCCC- -5'
16250 3' -56 NC_004084.1 + 4246 0.69 0.554115
Target:  5'- gCGUCGUucCUCGAGUUCCgCGGCa--- -3'
miRNA:   3'- gGCAGUA--GAGCUCAAGGaGCCGgccc -5'
16250 3' -56 NC_004084.1 + 52025 0.69 0.596217
Target:  5'- -aGUCAUCUCGG--UCCUCGGCg--- -3'
miRNA:   3'- ggCAGUAGAGCUcaAGGAGCCGgccc -5'
16250 3' -56 NC_004084.1 + 28340 0.68 0.606833
Target:  5'- gCCGUCcuucuUCUCGcggacgaguagcGGUUCCUCGGUCa-- -3'
miRNA:   3'- -GGCAGu----AGAGC------------UCAAGGAGCCGGccc -5'
16250 3' -56 NC_004084.1 + 43184 0.68 0.617469
Target:  5'- gUGUCAUCUC-AGUUUCUCGGUuugUGGu -3'
miRNA:   3'- gGCAGUAGAGcUCAAGGAGCCG---GCCc -5'
16250 3' -56 NC_004084.1 + 28139 0.68 0.63877
Target:  5'- aCGUCcucGUCUCGAua-CUUCGGCUGGa -3'
miRNA:   3'- gGCAG---UAGAGCUcaaGGAGCCGGCCc -5'
16250 3' -56 NC_004084.1 + 7122 0.68 0.660047
Target:  5'- gCCGUCuuggugaugAUCUcCGuGUaggUgUUCGGCCGGGg -3'
miRNA:   3'- -GGCAG---------UAGA-GCuCA---AgGAGCCGGCCC- -5'
16250 3' -56 NC_004084.1 + 54212 0.67 0.681228
Target:  5'- aCCGUCAgcggCUCGAGUcggaUCUCGacGUCGGa -3'
miRNA:   3'- -GGCAGUa---GAGCUCAa---GGAGC--CGGCCc -5'
16250 3' -56 NC_004084.1 + 35668 0.67 0.681228
Target:  5'- aCCGUC-UCgUCGAugUCCUCGuaccGCUGGGc -3'
miRNA:   3'- -GGCAGuAG-AGCUcaAGGAGC----CGGCCC- -5'
16250 3' -56 NC_004084.1 + 14658 0.67 0.691757
Target:  5'- cCCaGUCGaugCccgCGAGcgUCC-CGGCCGGGu -3'
miRNA:   3'- -GG-CAGUa--Ga--GCUCa-AGGaGCCGGCCC- -5'
16250 3' -56 NC_004084.1 + 35187 0.67 0.691757
Target:  5'- uCCGggCcgCUCGAGcUCCUCcgaaucGUCGGGa -3'
miRNA:   3'- -GGCa-GuaGAGCUCaAGGAGc-----CGGCCC- -5'
16250 3' -56 NC_004084.1 + 50955 0.67 0.691757
Target:  5'- gCCGUCGccgCUCGAGUcgCCgUCGGacuCCGaGGu -3'
miRNA:   3'- -GGCAGUa--GAGCUCAa-GG-AGCC---GGC-CC- -5'
16250 3' -56 NC_004084.1 + 35263 0.67 0.691757
Target:  5'- uCCGUCc---CGAGggggaagUCCUCGGCgcUGGGg -3'
miRNA:   3'- -GGCAGuagaGCUCa------AGGAGCCG--GCCC- -5'
16250 3' -56 NC_004084.1 + 54930 0.67 0.702232
Target:  5'- gCCGUCucgaUCGGGaUCCUCcGCCucGGGa -3'
miRNA:   3'- -GGCAGuag-AGCUCaAGGAGcCGG--CCC- -5'
16250 3' -56 NC_004084.1 + 52686 0.67 0.712644
Target:  5'- gCGaUCAUCccgaUCGAGgaCCUCGGCCc-- -3'
miRNA:   3'- gGC-AGUAG----AGCUCaaGGAGCCGGccc -5'
16250 3' -56 NC_004084.1 + 55360 0.67 0.712644
Target:  5'- cCCGUCGa--CGAGUUCCUCGa--GGGu -3'
miRNA:   3'- -GGCAGUagaGCUCAAGGAGCcggCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.