Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16250 | 3' | -56 | NC_004084.1 | + | 911 | 0.66 | 0.773191 |
Target: 5'- gCGUCGUCg-GAGUUCgCUgCGGCCu-- -3' miRNA: 3'- gGCAGUAGagCUCAAG-GA-GCCGGccc -5' |
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16250 | 3' | -56 | NC_004084.1 | + | 1415 | 0.7 | 0.533383 |
Target: 5'- gCGUCGccauUCUCGGcGUcgccgUCCUCGGCCGc- -3' miRNA: 3'- gGCAGU----AGAGCU-CA-----AGGAGCCGGCcc -5' |
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16250 | 3' | -56 | NC_004084.1 | + | 1999 | 0.66 | 0.753444 |
Target: 5'- aCGUCGUCgaggacgcgaUCGAGUUCgaCUCccaGCUGGGc -3' miRNA: 3'- gGCAGUAG----------AGCUCAAG--GAGc--CGGCCC- -5' |
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16250 | 3' | -56 | NC_004084.1 | + | 3100 | 0.66 | 0.773191 |
Target: 5'- aCCGUCG-CU-GAGUUCCUCGaugagaGGGa -3' miRNA: 3'- -GGCAGUaGAgCUCAAGGAGCcgg---CCC- -5' |
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16250 | 3' | -56 | NC_004084.1 | + | 4246 | 0.69 | 0.554115 |
Target: 5'- gCGUCGUucCUCGAGUUCCgCGGCa--- -3' miRNA: 3'- gGCAGUA--GAGCUCAAGGaGCCGgccc -5' |
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16250 | 3' | -56 | NC_004084.1 | + | 5719 | 0.7 | 0.543717 |
Target: 5'- aCGUCG-CUCGGGccgaggUCCUCGaUCGGGa -3' miRNA: 3'- gGCAGUaGAGCUCa-----AGGAGCcGGCCC- -5' |
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16250 | 3' | -56 | NC_004084.1 | + | 7122 | 0.68 | 0.660047 |
Target: 5'- gCCGUCuuggugaugAUCUcCGuGUaggUgUUCGGCCGGGg -3' miRNA: 3'- -GGCAG---------UAGA-GCuCA---AgGAGCCGGCCC- -5' |
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16250 | 3' | -56 | NC_004084.1 | + | 10704 | 0.66 | 0.743391 |
Target: 5'- gCCGgug-CUCG-GUUCuucgCUCGGCuCGGGg -3' miRNA: 3'- -GGCaguaGAGCuCAAG----GAGCCG-GCCC- -5' |
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16250 | 3' | -56 | NC_004084.1 | + | 14202 | 0.73 | 0.36991 |
Target: 5'- gCCGUCGgccauccgcUCgUCGAGgUCCUCaaccgagacauacuGGCCGGGa -3' miRNA: 3'- -GGCAGU---------AG-AGCUCaAGGAG--------------CCGGCCC- -5' |
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16250 | 3' | -56 | NC_004084.1 | + | 14658 | 0.67 | 0.691757 |
Target: 5'- cCCaGUCGaugCccgCGAGcgUCC-CGGCCGGGu -3' miRNA: 3'- -GG-CAGUa--Ga--GCUCa-AGGaGCCGGCCC- -5' |
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16250 | 3' | -56 | NC_004084.1 | + | 16655 | 0.72 | 0.416381 |
Target: 5'- aCGUCGUC-CGGGaggUCCUCGucGCCGGc -3' miRNA: 3'- gGCAGUAGaGCUCa--AGGAGC--CGGCCc -5' |
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16250 | 3' | -56 | NC_004084.1 | + | 21147 | 0.66 | 0.74238 |
Target: 5'- aCGUCcuggauuGUCgagagCGAG-UCCUCGacgagcGCCGGGa -3' miRNA: 3'- gGCAG-------UAGa----GCUCaAGGAGC------CGGCCC- -5' |
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16250 | 3' | -56 | NC_004084.1 | + | 21552 | 0.66 | 0.773191 |
Target: 5'- uCCGUCggCUUGAG-UCCacgCuGCCGGa -3' miRNA: 3'- -GGCAGuaGAGCUCaAGGa--GcCGGCCc -5' |
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16250 | 3' | -56 | NC_004084.1 | + | 28139 | 0.68 | 0.63877 |
Target: 5'- aCGUCcucGUCUCGAua-CUUCGGCUGGa -3' miRNA: 3'- gGCAG---UAGAGCUcaaGGAGCCGGCCc -5' |
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16250 | 3' | -56 | NC_004084.1 | + | 28340 | 0.68 | 0.606833 |
Target: 5'- gCCGUCcuucuUCUCGcggacgaguagcGGUUCCUCGGUCa-- -3' miRNA: 3'- -GGCAGu----AGAGC------------UCAAGGAGCCGGccc -5' |
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16250 | 3' | -56 | NC_004084.1 | + | 35187 | 0.67 | 0.691757 |
Target: 5'- uCCGggCcgCUCGAGcUCCUCcgaaucGUCGGGa -3' miRNA: 3'- -GGCa-GuaGAGCUCaAGGAGc-----CGGCCC- -5' |
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16250 | 3' | -56 | NC_004084.1 | + | 35263 | 0.67 | 0.691757 |
Target: 5'- uCCGUCc---CGAGggggaagUCCUCGGCgcUGGGg -3' miRNA: 3'- -GGCAGuagaGCUCa------AGGAGCCG--GCCC- -5' |
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16250 | 3' | -56 | NC_004084.1 | + | 35668 | 0.67 | 0.681228 |
Target: 5'- aCCGUC-UCgUCGAugUCCUCGuaccGCUGGGc -3' miRNA: 3'- -GGCAGuAG-AGCUcaAGGAGC----CGGCCC- -5' |
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16250 | 3' | -56 | NC_004084.1 | + | 35877 | 0.66 | 0.753444 |
Target: 5'- aCCG-CGUgaUCGGucgUCUUCGGCCGGa -3' miRNA: 3'- -GGCaGUAg-AGCUca-AGGAGCCGGCCc -5' |
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16250 | 3' | -56 | NC_004084.1 | + | 38191 | 0.66 | 0.76338 |
Target: 5'- gCGUCAUCUCGAaugacgucgacGUg-CUUGcGCCGGa -3' miRNA: 3'- gGCAGUAGAGCU-----------CAagGAGC-CGGCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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