miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16251 3' -61 NC_004084.1 + 57189 1.1 0.000297
Target:  5'- cGCGAUCGCCCUCGAUCCCGCCGCCGAg -3'
miRNA:   3'- -CGCUAGCGGGAGCUAGGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 49606 0.76 0.099185
Target:  5'- gGCGAguUCGCCgUCGAcggagaUCUCGUCGCCGGg -3'
miRNA:   3'- -CGCU--AGCGGgAGCU------AGGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 22195 0.75 0.127442
Target:  5'- cCGGUUGCCCUCGAggagaccggagagguUCCCcgccucGCCGUCGAa -3'
miRNA:   3'- cGCUAGCGGGAGCU---------------AGGG------CGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 22945 0.75 0.122805
Target:  5'- gGCGAUCGcCCCUCGA-CCUGCUccugGUCGAu -3'
miRNA:   3'- -CGCUAGC-GGGAGCUaGGGCGG----CGGCU- -5'
16251 3' -61 NC_004084.1 + 5136 0.75 0.127442
Target:  5'- cGCGGcuggucgccaggacgUCGCCCggccCGAUCUCGUCGCCGu -3'
miRNA:   3'- -CGCU---------------AGCGGGa---GCUAGGGCGGCGGCu -5'
16251 3' -61 NC_004084.1 + 48223 0.75 0.129479
Target:  5'- gGCGAUCGCCUgaGAagucUCCCGCCGCguUGAg -3'
miRNA:   3'- -CGCUAGCGGGagCU----AGGGCGGCG--GCU- -5'
16251 3' -61 NC_004084.1 + 51625 0.74 0.140121
Target:  5'- uCGAUUGCCUUCGAgaacgUCC-CCGCCGAg -3'
miRNA:   3'- cGCUAGCGGGAGCUa----GGGcGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 56010 0.74 0.140121
Target:  5'- cGCGuacuUUGCCCUCGA-CUCGUCGUCGGa -3'
miRNA:   3'- -CGCu---AGCGGGAGCUaGGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 6999 0.74 0.143843
Target:  5'- aGCGuGUCGCCCUCGAaggCCUcgacggcgucgGCCGCCa- -3'
miRNA:   3'- -CGC-UAGCGGGAGCUa--GGG-----------CGGCGGcu -5'
16251 3' -61 NC_004084.1 + 28312 0.73 0.159649
Target:  5'- gGCGAguagugaGCaCCUCGAgCUCGCCGCCGu -3'
miRNA:   3'- -CGCUag-----CG-GGAGCUaGGGCGGCGGCu -5'
16251 3' -61 NC_004084.1 + 1726 0.73 0.181599
Target:  5'- gGCGGcUGCUCgaUCGGUgaccgagaCCCGCCGCCGAa -3'
miRNA:   3'- -CGCUaGCGGG--AGCUA--------GGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 302 0.73 0.181135
Target:  5'- cGCGAaggguguaGCCC-CGAUCCUgcaugagGCCGCCGAa -3'
miRNA:   3'- -CGCUag------CGGGaGCUAGGG-------CGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 1503 0.73 0.172515
Target:  5'- --cGUCGCCCUCGAgCUCGaaGCCGAu -3'
miRNA:   3'- cgcUAGCGGGAGCUaGGGCggCGGCU- -5'
16251 3' -61 NC_004084.1 + 41804 0.72 0.191104
Target:  5'- aCGAUCGaCCUCGAggagCCCGCCGgguCCGu -3'
miRNA:   3'- cGCUAGCgGGAGCUa---GGGCGGC---GGCu -5'
16251 3' -61 NC_004084.1 + 6723 0.72 0.206179
Target:  5'- gGCGGUC-CCUUUGAUgCCGCCGaguCCGAu -3'
miRNA:   3'- -CGCUAGcGGGAGCUAgGGCGGC---GGCU- -5'
16251 3' -61 NC_004084.1 + 41108 0.71 0.24538
Target:  5'- uCGAUCGUaaUCUCGAUgugCUCGCCGCCa- -3'
miRNA:   3'- cGCUAGCG--GGAGCUA---GGGCGGCGGcu -5'
16251 3' -61 NC_004084.1 + 54791 0.71 0.216792
Target:  5'- cUGAUCGCCCUCcauaGUCCCGaugaCGCCc- -3'
miRNA:   3'- cGCUAGCGGGAGc---UAGGGCg---GCGGcu -5'
16251 3' -61 NC_004084.1 + 11025 0.71 0.222272
Target:  5'- uCGucgCGCCCUgGAgCUCGCCGUCGAc -3'
miRNA:   3'- cGCua-GCGGGAgCUaGGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 50071 0.71 0.233586
Target:  5'- gGCGAUUGCUCUCGAaaaCGCCgGCUGGa -3'
miRNA:   3'- -CGCUAGCGGGAGCUaggGCGG-CGGCU- -5'
16251 3' -61 NC_004084.1 + 23204 0.71 0.24538
Target:  5'- cGCGAUCGUCggCUCGAUCCCGaCGauuCGGa -3'
miRNA:   3'- -CGCUAGCGG--GAGCUAGGGCgGCg--GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.