Results 1 - 20 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16251 | 3' | -61 | NC_004084.1 | + | 477 | 0.67 | 0.417338 |
Target: 5'- cCGGuUCGUcgCCUCGAUCCUGCUGgCGc -3' miRNA: 3'- cGCU-AGCG--GGAGCUAGGGCGGCgGCu -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 29398 | 0.69 | 0.337365 |
Target: 5'- gGUGAUgcCGCCCUCGAugggcUCCUGCaucgcggucaucagGCCGAc -3' miRNA: 3'- -CGCUA--GCGGGAGCU-----AGGGCGg-------------CGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 32399 | 0.68 | 0.342023 |
Target: 5'- uCGAgucCGCgUUCGGUCCCGUCGaCGAg -3' miRNA: 3'- cGCUa--GCGgGAGCUAGGGCGGCgGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 35488 | 0.68 | 0.34989 |
Target: 5'- gGCGAUCGCCga-GAUCCCGaCCaaCGGu -3' miRNA: 3'- -CGCUAGCGGgagCUAGGGC-GGcgGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 57390 | 0.68 | 0.366006 |
Target: 5'- uCGAgcgCGCCCcCGAUCgcgucgaCGUCGCCGGc -3' miRNA: 3'- cGCUa--GCGGGaGCUAGg------GCGGCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 28602 | 0.68 | 0.374254 |
Target: 5'- aGUGGUCGUCUUCGGugaUCUCGUagcgGCCGGa -3' miRNA: 3'- -CGCUAGCGGGAGCU---AGGGCGg---CGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 512 | 0.67 | 0.391123 |
Target: 5'- aGCGGUCGgaCUUCGAUgagcgguucgCCCGCCGguUCGAg -3' miRNA: 3'- -CGCUAGCg-GGAGCUA----------GGGCGGC--GGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 5092 | 0.67 | 0.391123 |
Target: 5'- aGCGGUCuGCCCaggCGGg-CCGCCagcugGCCGAc -3' miRNA: 3'- -CGCUAG-CGGGa--GCUagGGCGG-----CGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 44029 | 0.67 | 0.399741 |
Target: 5'- --cAUCGCCC-CGAUCUCGCCGagUGGg -3' miRNA: 3'- cgcUAGCGGGaGCUAGGGCGGCg-GCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 47365 | 0.69 | 0.319196 |
Target: 5'- gGCGGcCGCCCcuUCG-UCCgCGUCGUCGAc -3' miRNA: 3'- -CGCUaGCGGG--AGCuAGG-GCGGCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 44520 | 0.7 | 0.293338 |
Target: 5'- aGCGGUCGCCCagcugcaggggaaGGUCCUcgGCUGCUGGu -3' miRNA: 3'- -CGCUAGCGGGag-----------CUAGGG--CGGCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 16934 | 0.7 | 0.257663 |
Target: 5'- cGCGAUCGUCUUCcguucucgCCCGCacuCGCCGGc -3' miRNA: 3'- -CGCUAGCGGGAGcua-----GGGCG---GCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 1726 | 0.73 | 0.181599 |
Target: 5'- gGCGGcUGCUCgaUCGGUgaccgagaCCCGCCGCCGAa -3' miRNA: 3'- -CGCUaGCGGG--AGCUA--------GGGCGGCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 41804 | 0.72 | 0.191104 |
Target: 5'- aCGAUCGaCCUCGAggagCCCGCCGgguCCGu -3' miRNA: 3'- cGCUAGCgGGAGCUa---GGGCGGC---GGCu -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 6723 | 0.72 | 0.206179 |
Target: 5'- gGCGGUC-CCUUUGAUgCCGCCGaguCCGAu -3' miRNA: 3'- -CGCUAGcGGGAGCUAgGGCGGC---GGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 20471 | 0.71 | 0.216792 |
Target: 5'- gGCGAagUCGUCUUcaaacgcgaCGAUCCCGCCGaCGAc -3' miRNA: 3'- -CGCU--AGCGGGA---------GCUAGGGCGGCgGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 54791 | 0.71 | 0.216792 |
Target: 5'- cUGAUCGCCCUCcauaGUCCCGaugaCGCCc- -3' miRNA: 3'- cGCUAGCGGGAGc---UAGGGCg---GCGGcu -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 31244 | 0.71 | 0.222272 |
Target: 5'- cGCGAUCGUCCUgaGAUUcucaCCGCgGUCGAg -3' miRNA: 3'- -CGCUAGCGGGAg-CUAG----GGCGgCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 50071 | 0.71 | 0.233586 |
Target: 5'- gGCGAUUGCUCUCGAaaaCGCCgGCUGGa -3' miRNA: 3'- -CGCUAGCGGGAGCUaggGCGG-CGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 28694 | 0.71 | 0.239422 |
Target: 5'- cCGGUCGCCCggaCGAUCUCcucgaacgGCCGCgCGGg -3' miRNA: 3'- cGCUAGCGGGa--GCUAGGG--------CGGCG-GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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