miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16251 3' -61 NC_004084.1 + 477 0.67 0.417338
Target:  5'- cCGGuUCGUcgCCUCGAUCCUGCUGgCGc -3'
miRNA:   3'- cGCU-AGCG--GGAGCUAGGGCGGCgGCu -5'
16251 3' -61 NC_004084.1 + 29398 0.69 0.337365
Target:  5'- gGUGAUgcCGCCCUCGAugggcUCCUGCaucgcggucaucagGCCGAc -3'
miRNA:   3'- -CGCUA--GCGGGAGCU-----AGGGCGg-------------CGGCU- -5'
16251 3' -61 NC_004084.1 + 32399 0.68 0.342023
Target:  5'- uCGAgucCGCgUUCGGUCCCGUCGaCGAg -3'
miRNA:   3'- cGCUa--GCGgGAGCUAGGGCGGCgGCU- -5'
16251 3' -61 NC_004084.1 + 35488 0.68 0.34989
Target:  5'- gGCGAUCGCCga-GAUCCCGaCCaaCGGu -3'
miRNA:   3'- -CGCUAGCGGgagCUAGGGC-GGcgGCU- -5'
16251 3' -61 NC_004084.1 + 57390 0.68 0.366006
Target:  5'- uCGAgcgCGCCCcCGAUCgcgucgaCGUCGCCGGc -3'
miRNA:   3'- cGCUa--GCGGGaGCUAGg------GCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 28602 0.68 0.374254
Target:  5'- aGUGGUCGUCUUCGGugaUCUCGUagcgGCCGGa -3'
miRNA:   3'- -CGCUAGCGGGAGCU---AGGGCGg---CGGCU- -5'
16251 3' -61 NC_004084.1 + 512 0.67 0.391123
Target:  5'- aGCGGUCGgaCUUCGAUgagcgguucgCCCGCCGguUCGAg -3'
miRNA:   3'- -CGCUAGCg-GGAGCUA----------GGGCGGC--GGCU- -5'
16251 3' -61 NC_004084.1 + 5092 0.67 0.391123
Target:  5'- aGCGGUCuGCCCaggCGGg-CCGCCagcugGCCGAc -3'
miRNA:   3'- -CGCUAG-CGGGa--GCUagGGCGG-----CGGCU- -5'
16251 3' -61 NC_004084.1 + 44029 0.67 0.399741
Target:  5'- --cAUCGCCC-CGAUCUCGCCGagUGGg -3'
miRNA:   3'- cgcUAGCGGGaGCUAGGGCGGCg-GCU- -5'
16251 3' -61 NC_004084.1 + 47365 0.69 0.319196
Target:  5'- gGCGGcCGCCCcuUCG-UCCgCGUCGUCGAc -3'
miRNA:   3'- -CGCUaGCGGG--AGCuAGG-GCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 44520 0.7 0.293338
Target:  5'- aGCGGUCGCCCagcugcaggggaaGGUCCUcgGCUGCUGGu -3'
miRNA:   3'- -CGCUAGCGGGag-----------CUAGGG--CGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 16934 0.7 0.257663
Target:  5'- cGCGAUCGUCUUCcguucucgCCCGCacuCGCCGGc -3'
miRNA:   3'- -CGCUAGCGGGAGcua-----GGGCG---GCGGCU- -5'
16251 3' -61 NC_004084.1 + 1726 0.73 0.181599
Target:  5'- gGCGGcUGCUCgaUCGGUgaccgagaCCCGCCGCCGAa -3'
miRNA:   3'- -CGCUaGCGGG--AGCUA--------GGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 41804 0.72 0.191104
Target:  5'- aCGAUCGaCCUCGAggagCCCGCCGgguCCGu -3'
miRNA:   3'- cGCUAGCgGGAGCUa---GGGCGGC---GGCu -5'
16251 3' -61 NC_004084.1 + 6723 0.72 0.206179
Target:  5'- gGCGGUC-CCUUUGAUgCCGCCGaguCCGAu -3'
miRNA:   3'- -CGCUAGcGGGAGCUAgGGCGGC---GGCU- -5'
16251 3' -61 NC_004084.1 + 20471 0.71 0.216792
Target:  5'- gGCGAagUCGUCUUcaaacgcgaCGAUCCCGCCGaCGAc -3'
miRNA:   3'- -CGCU--AGCGGGA---------GCUAGGGCGGCgGCU- -5'
16251 3' -61 NC_004084.1 + 54791 0.71 0.216792
Target:  5'- cUGAUCGCCCUCcauaGUCCCGaugaCGCCc- -3'
miRNA:   3'- cGCUAGCGGGAGc---UAGGGCg---GCGGcu -5'
16251 3' -61 NC_004084.1 + 31244 0.71 0.222272
Target:  5'- cGCGAUCGUCCUgaGAUUcucaCCGCgGUCGAg -3'
miRNA:   3'- -CGCUAGCGGGAg-CUAG----GGCGgCGGCU- -5'
16251 3' -61 NC_004084.1 + 50071 0.71 0.233586
Target:  5'- gGCGAUUGCUCUCGAaaaCGCCgGCUGGa -3'
miRNA:   3'- -CGCUAGCGGGAGCUaggGCGG-CGGCU- -5'
16251 3' -61 NC_004084.1 + 28694 0.71 0.239422
Target:  5'- cCGGUCGCCCggaCGAUCUCcucgaacgGCCGCgCGGg -3'
miRNA:   3'- cGCUAGCGGGa--GCUAGGG--------CGGCG-GCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.