Results 41 - 60 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16251 | 3' | -61 | NC_004084.1 | + | 47365 | 0.69 | 0.319196 |
Target: 5'- gGCGGcCGCCCcuUCG-UCCgCGUCGUCGAc -3' miRNA: 3'- -CGCUaGCGGG--AGCuAGG-GCGGCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 29398 | 0.69 | 0.337365 |
Target: 5'- gGUGAUgcCGCCCUCGAugggcUCCUGCaucgcggucaucagGCCGAc -3' miRNA: 3'- -CGCUA--GCGGGAGCU-----AGGGCGg-------------CGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 28602 | 0.68 | 0.374254 |
Target: 5'- aGUGGUCGUCUUCGGugaUCUCGUagcgGCCGGa -3' miRNA: 3'- -CGCUAGCGGGAGCU---AGGGCGg---CGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 57390 | 0.68 | 0.366006 |
Target: 5'- uCGAgcgCGCCCcCGAUCgcgucgaCGUCGCCGGc -3' miRNA: 3'- cGCUa--GCGGGaGCUAGg------GCGGCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 35488 | 0.68 | 0.34989 |
Target: 5'- gGCGAUCGCCga-GAUCCCGaCCaaCGGu -3' miRNA: 3'- -CGCUAGCGGgagCUAGGGC-GGcgGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 5749 | 0.68 | 0.357884 |
Target: 5'- aUGAUCG-CCUCGAcgacgaucuccgUCUCGCCgcaGCCGAg -3' miRNA: 3'- cGCUAGCgGGAGCU------------AGGGCGG---CGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 32399 | 0.68 | 0.342023 |
Target: 5'- uCGAgucCGCgUUCGGUCCCGUCGaCGAg -3' miRNA: 3'- cGCUa--GCGgGAGCUAGGGCGGCgGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 2249 | 0.68 | 0.382626 |
Target: 5'- -aGAUC-UCCUCGGUCuuGCCGuuGu -3' miRNA: 3'- cgCUAGcGGGAGCUAGggCGGCggCu -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 36081 | 0.68 | 0.374254 |
Target: 5'- aGUucUCGCCCUCGAguUCCuCGUCGUCu- -3' miRNA: 3'- -CGcuAGCGGGAGCU--AGG-GCGGCGGcu -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 11411 | 0.68 | 0.357884 |
Target: 5'- cGCGA-CGUCCUCGAggaaCUCGCgGUCGu -3' miRNA: 3'- -CGCUaGCGGGAGCUa---GGGCGgCGGCu -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 21488 | 0.68 | 0.357884 |
Target: 5'- gGCGAUCG-CCUCGGUUgCGUCGuaGGc -3' miRNA: 3'- -CGCUAGCgGGAGCUAGgGCGGCggCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 53065 | 0.68 | 0.357884 |
Target: 5'- -aGAUCGUCC-CaGUCCuCGCCGCCc- -3' miRNA: 3'- cgCUAGCGGGaGcUAGG-GCGGCGGcu -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 54844 | 0.68 | 0.357884 |
Target: 5'- cGCGGUCGCCCgcucgcuuuccaUCGGaccgaCCUGCCaguucgagugucGCCGAa -3' miRNA: 3'- -CGCUAGCGGG------------AGCUa----GGGCGG------------CGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 57122 | 0.68 | 0.357884 |
Target: 5'- uCGAggaCGUCCUCGGUgUCGCCGUCu- -3' miRNA: 3'- cGCUa--GCGGGAGCUAgGGCGGCGGcu -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 7096 | 0.68 | 0.366006 |
Target: 5'- cGCGggCGCaCUCGAUCgCCucgGUCGCCGu -3' miRNA: 3'- -CGCuaGCGgGAGCUAG-GG---CGGCGGCu -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 9056 | 0.67 | 0.423607 |
Target: 5'- cUGGUUGCCCUUcuggaacguucggaGAUCgCCGCgguaCGCCGAc -3' miRNA: 3'- cGCUAGCGGGAG--------------CUAG-GGCG----GCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 22809 | 0.67 | 0.417338 |
Target: 5'- uCGAgagggCGUCacggaUCGAUCCguucgaGCCGCCGAg -3' miRNA: 3'- cGCUa----GCGGg----AGCUAGGg-----CGGCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 38393 | 0.67 | 0.40848 |
Target: 5'- cGCGAucgUCGUCCUCGAg--CGCCGaUCGGa -3' miRNA: 3'- -CGCU---AGCGGGAGCUaggGCGGC-GGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 11105 | 0.67 | 0.40848 |
Target: 5'- -aGAUCGCCguucgcggCUCGAaggaugUCCCagaGCCGCUGGa -3' miRNA: 3'- cgCUAGCGG--------GAGCU------AGGG---CGGCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 7366 | 0.67 | 0.40848 |
Target: 5'- cGCGGuUCGCuCCgacggUGAUCCCGCCuGCg-- -3' miRNA: 3'- -CGCU-AGCG-GGa----GCUAGGGCGG-CGgcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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