miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16251 3' -61 NC_004084.1 + 22195 0.75 0.127442
Target:  5'- cCGGUUGCCCUCGAggagaccggagagguUCCCcgccucGCCGUCGAa -3'
miRNA:   3'- cGCUAGCGGGAGCU---------------AGGG------CGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 22809 0.67 0.417338
Target:  5'- uCGAgagggCGUCacggaUCGAUCCguucgaGCCGCCGAg -3'
miRNA:   3'- cGCUa----GCGGg----AGCUAGGg-----CGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 22863 0.66 0.453902
Target:  5'- -aGAgcugCGUCCggCGGcaCUCGCCGCCGAg -3'
miRNA:   3'- cgCUa---GCGGGa-GCUa-GGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 22945 0.75 0.122805
Target:  5'- gGCGAUCGcCCCUCGA-CCUGCUccugGUCGAu -3'
miRNA:   3'- -CGCUAGC-GGGAGCUaGGGCGG----CGGCU- -5'
16251 3' -61 NC_004084.1 + 23204 0.71 0.24538
Target:  5'- cGCGAUCGUCggCUCGAUCCCGaCGauuCGGa -3'
miRNA:   3'- -CGCUAGCGG--GAGCUAGGGCgGCg--GCU- -5'
16251 3' -61 NC_004084.1 + 27979 0.69 0.297532
Target:  5'- aGCGGgacgUCGUCCUCGccaucgcUUCCGUCGCCGc -3'
miRNA:   3'- -CGCU----AGCGGGAGCu------AGGGCGGCGGCu -5'
16251 3' -61 NC_004084.1 + 28312 0.73 0.159649
Target:  5'- gGCGAguagugaGCaCCUCGAgCUCGCCGCCGu -3'
miRNA:   3'- -CGCUag-----CG-GGAGCUaGGGCGGCGGCu -5'
16251 3' -61 NC_004084.1 + 28602 0.68 0.374254
Target:  5'- aGUGGUCGUCUUCGGugaUCUCGUagcgGCCGGa -3'
miRNA:   3'- -CGCUAGCGGGAGCU---AGGGCGg---CGGCU- -5'
16251 3' -61 NC_004084.1 + 28694 0.71 0.239422
Target:  5'- cCGGUCGCCCggaCGAUCUCcucgaacgGCCGCgCGGg -3'
miRNA:   3'- cGCUAGCGGGa--GCUAGGG--------CGGCG-GCU- -5'
16251 3' -61 NC_004084.1 + 29067 0.66 0.453902
Target:  5'- cGCGAcCGCCCgcUCGGgggCgUCGUCGCCGc -3'
miRNA:   3'- -CGCUaGCGGG--AGCUa--G-GGCGGCGGCu -5'
16251 3' -61 NC_004084.1 + 29398 0.69 0.337365
Target:  5'- gGUGAUgcCGCCCUCGAugggcUCCUGCaucgcggucaucagGCCGAc -3'
miRNA:   3'- -CGCUA--GCGGGAGCU-----AGGGCGg-------------CGGCU- -5'
16251 3' -61 NC_004084.1 + 29505 0.66 0.444596
Target:  5'- cCGAcgUCGCUCUCGGgcacaCCCGCuuCGCCa- -3'
miRNA:   3'- cGCU--AGCGGGAGCUa----GGGCG--GCGGcu -5'
16251 3' -61 NC_004084.1 + 31244 0.71 0.222272
Target:  5'- cGCGAUCGUCCUgaGAUUcucaCCGCgGUCGAg -3'
miRNA:   3'- -CGCUAGCGGGAg-CUAG----GGCGgCGGCU- -5'
16251 3' -61 NC_004084.1 + 31538 0.66 0.472825
Target:  5'- cGCGAUCG-CCUCGGaggacaUCgCGCUaCCGAc -3'
miRNA:   3'- -CGCUAGCgGGAGCU------AGgGCGGcGGCU- -5'
16251 3' -61 NC_004084.1 + 32399 0.68 0.342023
Target:  5'- uCGAgucCGCgUUCGGUCCCGUCGaCGAg -3'
miRNA:   3'- cGCUa--GCGgGAGCUAGGGCGGCgGCU- -5'
16251 3' -61 NC_004084.1 + 35006 0.67 0.435398
Target:  5'- aGCGAUCaGCUgggCUCGAgUUUCGUCGUCGAu -3'
miRNA:   3'- -CGCUAG-CGG---GAGCU-AGGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 35335 0.66 0.472825
Target:  5'- -aGGUCGCCgacguccacCUCG-UCgCGUCGCCGGc -3'
miRNA:   3'- cgCUAGCGG---------GAGCuAGgGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 35488 0.68 0.34989
Target:  5'- gGCGAUCGCCga-GAUCCCGaCCaaCGGu -3'
miRNA:   3'- -CGCUAGCGGgagCUAGGGC-GGcgGCU- -5'
16251 3' -61 NC_004084.1 + 35536 0.66 0.453902
Target:  5'- cGUGAUCGaggaCCUCGGcggCgagUGCCGCCGGa -3'
miRNA:   3'- -CGCUAGCg---GGAGCUa--Gg--GCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 36081 0.68 0.374254
Target:  5'- aGUucUCGCCCUCGAguUCCuCGUCGUCu- -3'
miRNA:   3'- -CGcuAGCGGGAGCU--AGG-GCGGCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.