miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16251 3' -61 NC_004084.1 + 9056 0.67 0.423607
Target:  5'- cUGGUUGCCCUUcuggaacguucggaGAUCgCCGCgguaCGCCGAc -3'
miRNA:   3'- cGCUAGCGGGAG--------------CUAG-GGCG----GCGGCU- -5'
16251 3' -61 NC_004084.1 + 9139 0.7 0.270446
Target:  5'- -gGAaCGCCUUCGAcuUCgCCGUCGCCGu -3'
miRNA:   3'- cgCUaGCGGGAGCU--AG-GGCGGCGGCu -5'
16251 3' -61 NC_004084.1 + 11025 0.71 0.222272
Target:  5'- uCGucgCGCCCUgGAgCUCGCCGUCGAc -3'
miRNA:   3'- cGCua-GCGGGAgCUaGGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 11105 0.67 0.40848
Target:  5'- -aGAUCGCCguucgcggCUCGAaggaugUCCCagaGCCGCUGGa -3'
miRNA:   3'- cgCUAGCGG--------GAGCU------AGGG---CGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 11411 0.68 0.357884
Target:  5'- cGCGA-CGUCCUCGAggaaCUCGCgGUCGu -3'
miRNA:   3'- -CGCUaGCGGGAGCUa---GGGCGgCGGCu -5'
16251 3' -61 NC_004084.1 + 11846 0.7 0.25146
Target:  5'- aCGAUCGCCg-CGAUgCCGauGCCGAg -3'
miRNA:   3'- cGCUAGCGGgaGCUAgGGCggCGGCU- -5'
16251 3' -61 NC_004084.1 + 12211 0.67 0.417338
Target:  5'- aUGAUCGUcgacgcauCCgacgaCGAUCUCGCCGCCu- -3'
miRNA:   3'- cGCUAGCG--------GGa----GCUAGGGCGGCGGcu -5'
16251 3' -61 NC_004084.1 + 14173 0.66 0.453902
Target:  5'- cCGGUCGuCCCgucguagaCGAgcUCCCaGCCGUCGGc -3'
miRNA:   3'- cGCUAGC-GGGa-------GCU--AGGG-CGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 14453 0.66 0.482434
Target:  5'- aGCG-UCGuuCCCUCGcccUCCCagGCCGCCu- -3'
miRNA:   3'- -CGCuAGC--GGGAGCu--AGGG--CGGCGGcu -5'
16251 3' -61 NC_004084.1 + 14608 0.66 0.472825
Target:  5'- aUGAUCcaucuCCCggCGcUCCuCGCCGCCGGa -3'
miRNA:   3'- cGCUAGc----GGGa-GCuAGG-GCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 14650 0.69 0.334285
Target:  5'- gGCGAgCGCCCagUCGAUgCCCGCgagcgucccgGCCGGg -3'
miRNA:   3'- -CGCUaGCGGG--AGCUA-GGGCGg---------CGGCU- -5'
16251 3' -61 NC_004084.1 + 16652 0.69 0.326676
Target:  5'- uCGAcgUCGUCCgggaGGUCCuCGUCGCCGGc -3'
miRNA:   3'- cGCU--AGCGGGag--CUAGG-GCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 16934 0.7 0.257663
Target:  5'- cGCGAUCGUCUUCcguucucgCCCGCacuCGCCGGc -3'
miRNA:   3'- -CGCUAGCGGGAGcua-----GGGCG---GCGGCU- -5'
16251 3' -61 NC_004084.1 + 19153 0.7 0.290568
Target:  5'- cGCGAUCGacgaccaCCaUCu-UCCCGCCGCCc- -3'
miRNA:   3'- -CGCUAGCg------GG-AGcuAGGGCGGCGGcu -5'
16251 3' -61 NC_004084.1 + 19360 0.67 0.387709
Target:  5'- cCGAUCGCCCUCGuaguacucggcaugAugcugauUCCaCGCaUGCCGAg -3'
miRNA:   3'- cGCUAGCGGGAGC--------------U-------AGG-GCG-GCGGCU- -5'
16251 3' -61 NC_004084.1 + 20471 0.71 0.216792
Target:  5'- gGCGAagUCGUCUUcaaacgcgaCGAUCCCGCCGaCGAc -3'
miRNA:   3'- -CGCU--AGCGGGA---------GCUAGGGCGGCgGCU- -5'
16251 3' -61 NC_004084.1 + 21214 0.67 0.435398
Target:  5'- -aGAUCGUCaggCGGuacuUCCCGUCGUCGGu -3'
miRNA:   3'- cgCUAGCGGga-GCU----AGGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 21488 0.68 0.357884
Target:  5'- gGCGAUCG-CCUCGGUUgCGUCGuaGGc -3'
miRNA:   3'- -CGCUAGCgGGAGCUAGgGCGGCggCU- -5'
16251 3' -61 NC_004084.1 + 21494 0.66 0.444596
Target:  5'- gGCGAUaucuggaaCGCgauUCUCGAaacgUUCGCCGCCGAg -3'
miRNA:   3'- -CGCUA--------GCG---GGAGCUa---GGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 21539 0.7 0.256413
Target:  5'- gGCGAUCGCaucuuccgucggCUUGAgUCCaCGCUGCCGGa -3'
miRNA:   3'- -CGCUAGCGg-----------GAGCU-AGG-GCGGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.