miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16251 3' -61 NC_004084.1 + 49505 0.66 0.463313
Target:  5'- -gGAUCGUCUUCGGcUUCCGCCucuucguCCGAg -3'
miRNA:   3'- cgCUAGCGGGAGCU-AGGGCGGc------GGCU- -5'
16251 3' -61 NC_004084.1 + 49271 0.71 0.233586
Target:  5'- aGCGAUUacCCCUCGAcUUCCGCCcgacggacGCCGAu -3'
miRNA:   3'- -CGCUAGc-GGGAGCU-AGGGCGG--------CGGCU- -5'
16251 3' -61 NC_004084.1 + 48223 0.75 0.129479
Target:  5'- gGCGAUCGCCUgaGAagucUCCCGCCGCguUGAg -3'
miRNA:   3'- -CGCUAGCGGGagCU----AGGGCGGCG--GCU- -5'
16251 3' -61 NC_004084.1 + 48145 0.66 0.453902
Target:  5'- cCGGaUGCCCUCGAacaucgugaUCCgGaCGCCGAc -3'
miRNA:   3'- cGCUaGCGGGAGCU---------AGGgCgGCGGCU- -5'
16251 3' -61 NC_004084.1 + 48042 0.67 0.426311
Target:  5'- uCGAUCGCCugCUCGAcUCUCGUcguuCGUCGAa -3'
miRNA:   3'- cGCUAGCGG--GAGCU-AGGGCG----GCGGCU- -5'
16251 3' -61 NC_004084.1 + 47365 0.69 0.319196
Target:  5'- gGCGGcCGCCCcuUCG-UCCgCGUCGUCGAc -3'
miRNA:   3'- -CGCUaGCGGG--AGCuAGG-GCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 47322 0.67 0.435398
Target:  5'- cGCGAaCGg---CGAUCUCGUCGCCGAc -3'
miRNA:   3'- -CGCUaGCgggaGCUAGGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 45274 0.66 0.463313
Target:  5'- uCGGUCGUCCga-AUCgUCGCCGUCGAa -3'
miRNA:   3'- cGCUAGCGGGagcUAG-GGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 44520 0.7 0.293338
Target:  5'- aGCGGUCGCCCagcugcaggggaaGGUCCUcgGCUGCUGGu -3'
miRNA:   3'- -CGCUAGCGGGag-----------CUAGGG--CGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 44029 0.67 0.399741
Target:  5'- --cAUCGCCC-CGAUCUCGCCGagUGGg -3'
miRNA:   3'- cgcUAGCGGGaGCUAGGGCGGCg-GCU- -5'
16251 3' -61 NC_004084.1 + 41945 0.66 0.444596
Target:  5'- aUGGUCGUCuCUCGAggcCCUGCCGgaaCGAc -3'
miRNA:   3'- cGCUAGCGG-GAGCUa--GGGCGGCg--GCU- -5'
16251 3' -61 NC_004084.1 + 41804 0.72 0.191104
Target:  5'- aCGAUCGaCCUCGAggagCCCGCCGgguCCGu -3'
miRNA:   3'- cGCUAGCgGGAGCUa---GGGCGGC---GGCu -5'
16251 3' -61 NC_004084.1 + 41108 0.71 0.24538
Target:  5'- uCGAUCGUaaUCUCGAUgugCUCGCCGCCa- -3'
miRNA:   3'- cGCUAGCG--GGAGCUA---GGGCGGCGGcu -5'
16251 3' -61 NC_004084.1 + 41019 0.66 0.482434
Target:  5'- -aGAUC-UCCUCGAUCacuCUGCCGgCGAg -3'
miRNA:   3'- cgCUAGcGGGAGCUAG---GGCGGCgGCU- -5'
16251 3' -61 NC_004084.1 + 40447 0.7 0.283733
Target:  5'- -aGcgCGCCgaCGAUUCCGCCGUCa- -3'
miRNA:   3'- cgCuaGCGGgaGCUAGGGCGGCGGcu -5'
16251 3' -61 NC_004084.1 + 40339 0.66 0.444596
Target:  5'- -aGAUCGUCCUCGAagggcggcacaUCgaCCgcggcaucaaaGCCGCCGAc -3'
miRNA:   3'- cgCUAGCGGGAGCU-----------AG--GG-----------CGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 40247 0.66 0.482434
Target:  5'- cGCGAgugaCGUgCUCGAUCUccaucguccacuCGCCGgCGAc -3'
miRNA:   3'- -CGCUa---GCGgGAGCUAGG------------GCGGCgGCU- -5'
16251 3' -61 NC_004084.1 + 38393 0.67 0.40848
Target:  5'- cGCGAucgUCGUCCUCGAg--CGCCGaUCGGa -3'
miRNA:   3'- -CGCU---AGCGGGAGCUaggGCGGC-GGCU- -5'
16251 3' -61 NC_004084.1 + 36813 0.66 0.453902
Target:  5'- -aGAUCGuCCCgagaCGGUCCagcuGCuCGCCGGu -3'
miRNA:   3'- cgCUAGC-GGGa---GCUAGGg---CG-GCGGCU- -5'
16251 3' -61 NC_004084.1 + 36245 0.66 0.453902
Target:  5'- gGUGggCGCUg-CGAUCCCuCCGCCa- -3'
miRNA:   3'- -CGCuaGCGGgaGCUAGGGcGGCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.