Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16253 | 3' | -56.4 | NC_004084.1 | + | 2316 | 0.69 | 0.523825 |
Target: 5'- -cUCGCCGGagaucuugUUGAGCuccuGCCGCCAgagucgucguUCCg -3' miRNA: 3'- ccAGUGGCU--------AGCUCGu---CGGCGGU----------AGG- -5' |
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16253 | 3' | -56.4 | NC_004084.1 | + | 5263 | 0.69 | 0.517632 |
Target: 5'- aGUCAUCGGccUCGucgacgacgucccgcAGCGGaugguCCGCCAUCCa -3' miRNA: 3'- cCAGUGGCU--AGC---------------UCGUC-----GGCGGUAGG- -5' |
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16253 | 3' | -56.4 | NC_004084.1 | + | 41800 | 0.69 | 0.513519 |
Target: 5'- cGUCACgauCGAccUCGAGgAGcCCGCCggGUCCg -3' miRNA: 3'- cCAGUG---GCU--AGCUCgUC-GGCGG--UAGG- -5' |
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16253 | 3' | -56.4 | NC_004084.1 | + | 33738 | 0.69 | 0.513519 |
Target: 5'- -uUCGCCag-CGAGCGGCagCGCUGUCCc -3' miRNA: 3'- ccAGUGGcuaGCUCGUCG--GCGGUAGG- -5' |
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16253 | 3' | -56.4 | NC_004084.1 | + | 23837 | 0.69 | 0.513519 |
Target: 5'- cGUCG-CGAUgGAgGCAGUCGCCG-CCa -3' miRNA: 3'- cCAGUgGCUAgCU-CGUCGGCGGUaGG- -5' |
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16253 | 3' | -56.4 | NC_004084.1 | + | 27528 | 0.69 | 0.513519 |
Target: 5'- gGGgagaucgCGCCGuuGUCGAGaAGCuCGCCAUCg -3' miRNA: 3'- -CCa------GUGGC--UAGCUCgUCG-GCGGUAGg -5' |
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16253 | 3' | -56.4 | NC_004084.1 | + | 34943 | 0.69 | 0.503299 |
Target: 5'- -cUCGCUGAUCGAGUccaUCGCgGUCCg -3' miRNA: 3'- ccAGUGGCUAGCUCGuc-GGCGgUAGG- -5' |
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16253 | 3' | -56.4 | NC_004084.1 | + | 5610 | 0.69 | 0.503299 |
Target: 5'- uGGUCAgccaUCGGUCGgaaccuccugaAGCAGCCGC--UCCu -3' miRNA: 3'- -CCAGU----GGCUAGC-----------UCGUCGGCGguAGG- -5' |
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16253 | 3' | -56.4 | NC_004084.1 | + | 10241 | 0.7 | 0.483131 |
Target: 5'- aGGUCGCCuggUGAgucGCGGUCGgCGUCCg -3' miRNA: 3'- -CCAGUGGcuaGCU---CGUCGGCgGUAGG- -5' |
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16253 | 3' | -56.4 | NC_004084.1 | + | 49188 | 0.7 | 0.483131 |
Target: 5'- uGGaCGCCcuGAUCGAGCAG--GUCAUCCa -3' miRNA: 3'- -CCaGUGG--CUAGCUCGUCggCGGUAGG- -5' |
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16253 | 3' | -56.4 | NC_004084.1 | + | 7098 | 0.7 | 0.444021 |
Target: 5'- cGGgcgCACuCGAUCGccuCGGUCGCCGUCUu -3' miRNA: 3'- -CCa--GUG-GCUAGCuc-GUCGGCGGUAGG- -5' |
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16253 | 3' | -56.4 | NC_004084.1 | + | 52885 | 0.7 | 0.434523 |
Target: 5'- gGGUCGCCugauGGUCGAGUuccUCGCCAcCCa -3' miRNA: 3'- -CCAGUGG----CUAGCUCGuc-GGCGGUaGG- -5' |
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16253 | 3' | -56.4 | NC_004084.1 | + | 55991 | 0.7 | 0.434523 |
Target: 5'- -aUCGCCGAUggCGAGCaucgcuggcgAGCCGCCAa-- -3' miRNA: 3'- ccAGUGGCUA--GCUCG----------UCGGCGGUagg -5' |
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16253 | 3' | -56.4 | NC_004084.1 | + | 31493 | 0.71 | 0.425144 |
Target: 5'- cGUCG-CGAUgGAgGCAGUCGCCGccUCCa -3' miRNA: 3'- cCAGUgGCUAgCU-CGUCGGCGGU--AGG- -5' |
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16253 | 3' | -56.4 | NC_004084.1 | + | 18860 | 0.71 | 0.397748 |
Target: 5'- cGGUC-CCGGUCGAGUcgaucgcGCUGgCCAUCa -3' miRNA: 3'- -CCAGuGGCUAGCUCGu------CGGC-GGUAGg -5' |
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16253 | 3' | -56.4 | NC_004084.1 | + | 5560 | 0.71 | 0.397748 |
Target: 5'- cGG-CACCGcUCGAGCAGaUCGUCAacugCCg -3' miRNA: 3'- -CCaGUGGCuAGCUCGUC-GGCGGUa---GG- -5' |
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16253 | 3' | -56.4 | NC_004084.1 | + | 23272 | 0.71 | 0.388871 |
Target: 5'- cGGUCuggaGAcCGAGCGGCCGaCCAgUCCc -3' miRNA: 3'- -CCAGugg-CUaGCUCGUCGGC-GGU-AGG- -5' |
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16253 | 3' | -56.4 | NC_004084.1 | + | 48545 | 0.71 | 0.380125 |
Target: 5'- cGGUCGCCGAcucuuccgcCGGGCucccgcgugAGCCGCCcucgCCg -3' miRNA: 3'- -CCAGUGGCUa--------GCUCG---------UCGGCGGua--GG- -5' |
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16253 | 3' | -56.4 | NC_004084.1 | + | 13611 | 0.72 | 0.371512 |
Target: 5'- cGUCACCGAcCGGGUGGUCGggaCCGUCg -3' miRNA: 3'- cCAGUGGCUaGCUCGUCGGC---GGUAGg -5' |
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16253 | 3' | -56.4 | NC_004084.1 | + | 35949 | 0.73 | 0.330475 |
Target: 5'- cGUCGCCGGggUCG-GCGGCCGUgaccaGUCCc -3' miRNA: 3'- cCAGUGGCU--AGCuCGUCGGCGg----UAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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