miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16253 3' -56.4 NC_004084.1 + 42259 0.67 0.619274
Target:  5'- uGGUCGagUGAugcUCGAGCAGCgCGaCCA-CCg -3'
miRNA:   3'- -CCAGUg-GCU---AGCUCGUCG-GC-GGUaGG- -5'
16253 3' -56.4 NC_004084.1 + 21796 0.67 0.608515
Target:  5'- cGUCACCGAUCaccuGGC-GCUucuCCGUCCg -3'
miRNA:   3'- cCAGUGGCUAGc---UCGuCGGc--GGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 56611 0.67 0.608515
Target:  5'- cGUCGCCGGUCG-GCgAGuUCGCCGgaUCg -3'
miRNA:   3'- cCAGUGGCUAGCuCG-UC-GGCGGU--AGg -5'
16253 3' -56.4 NC_004084.1 + 43125 0.67 0.608515
Target:  5'- cGGUCAUCaccGUCGc-CAGCCGCCGgauauugCCg -3'
miRNA:   3'- -CCAGUGGc--UAGCucGUCGGCGGUa------GG- -5'
16253 3' -56.4 NC_004084.1 + 38975 0.67 0.608515
Target:  5'- -uUCACCGAgUCGAcaAGCCGCCuuAUCg -3'
miRNA:   3'- ccAGUGGCU-AGCUcgUCGGCGG--UAGg -5'
16253 3' -56.4 NC_004084.1 + 7003 0.67 0.607441
Target:  5'- uGUCGCCc-UCGAaggccucgacggcGuCGGCCGCCAUCUc -3'
miRNA:   3'- cCAGUGGcuAGCU-------------C-GUCGGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 58100 0.68 0.597777
Target:  5'- uGGUCGCCGcgccccugcuUCGgguucucgucGGCGGUCGUCGUCg -3'
miRNA:   3'- -CCAGUGGCu---------AGC----------UCGUCGGCGGUAGg -5'
16253 3' -56.4 NC_004084.1 + 53377 0.68 0.597777
Target:  5'- aGUCGuCCGu----GUAGUCGCCAUCCu -3'
miRNA:   3'- cCAGU-GGCuagcuCGUCGGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 26935 0.68 0.596704
Target:  5'- uGGUUgaaaccaACCaGGUCGaAGCGaugcguGCUGCCGUCCu -3'
miRNA:   3'- -CCAG-------UGG-CUAGC-UCGU------CGGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 14174 0.68 0.587066
Target:  5'- cGGUCGucCCGucguagaCGAGCucccAGCCgucgGCCAUCCg -3'
miRNA:   3'- -CCAGU--GGCua-----GCUCG----UCGG----CGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 1539 0.68 0.587066
Target:  5'- cGGUCuggACCGAggCGA-CGGCCGUCGagCCg -3'
miRNA:   3'- -CCAG---UGGCUa-GCUcGUCGGCGGUa-GG- -5'
16253 3' -56.4 NC_004084.1 + 46624 0.68 0.576392
Target:  5'- uGG-CACCuuAUCGAuGguGUCGCCAUCg -3'
miRNA:   3'- -CCaGUGGc-UAGCU-CguCGGCGGUAGg -5'
16253 3' -56.4 NC_004084.1 + 51926 0.68 0.576392
Target:  5'- cGG-CACCG-UCGGGC-GCCGUCuUCUc -3'
miRNA:   3'- -CCaGUGGCuAGCUCGuCGGCGGuAGG- -5'
16253 3' -56.4 NC_004084.1 + 54124 0.68 0.576392
Target:  5'- aGGUCGCCG-UCGGcuucCAGCaccugaCGCCGUUCg -3'
miRNA:   3'- -CCAGUGGCuAGCUc---GUCG------GCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 35042 0.68 0.575327
Target:  5'- -cUCAUCGAugaUCGccugauaccggcaGGCGGUCGCCAUCg -3'
miRNA:   3'- ccAGUGGCU---AGC-------------UCGUCGGCGGUAGg -5'
16253 3' -56.4 NC_004084.1 + 18716 0.68 0.559407
Target:  5'- cGUCGCCGucacuggcggguucgGUCGAGCcGuuGCCcugCCa -3'
miRNA:   3'- cCAGUGGC---------------UAGCUCGuCggCGGua-GG- -5'
16253 3' -56.4 NC_004084.1 + 57127 0.68 0.555182
Target:  5'- -aUCACUcAUCGAGCgAGCCgGgCAUCCc -3'
miRNA:   3'- ccAGUGGcUAGCUCG-UCGG-CgGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 514 0.68 0.544662
Target:  5'- cGGUCGgacuUCGAU-GAGCGGuUCGCCcgCCg -3'
miRNA:   3'- -CCAGU----GGCUAgCUCGUC-GGCGGuaGG- -5'
16253 3' -56.4 NC_004084.1 + 22818 0.68 0.544662
Target:  5'- cGUCACgGAUCGAuccGUucgAGCCGCCGa-- -3'
miRNA:   3'- cCAGUGgCUAGCU---CG---UCGGCGGUagg -5'
16253 3' -56.4 NC_004084.1 + 1408 0.68 0.544662
Target:  5'- -aUCACCGGcgUCGccauucucGGC-GUCGCCGUCCu -3'
miRNA:   3'- ccAGUGGCU--AGC--------UCGuCGGCGGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.