miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16253 3' -56.4 NC_004084.1 + 31493 0.71 0.425144
Target:  5'- cGUCG-CGAUgGAgGCAGUCGCCGccUCCa -3'
miRNA:   3'- cCAGUgGCUAgCU-CGUCGGCGGU--AGG- -5'
16253 3' -56.4 NC_004084.1 + 55991 0.7 0.434523
Target:  5'- -aUCGCCGAUggCGAGCaucgcuggcgAGCCGCCAa-- -3'
miRNA:   3'- ccAGUGGCUA--GCUCG----------UCGGCGGUagg -5'
16253 3' -56.4 NC_004084.1 + 52885 0.7 0.434523
Target:  5'- gGGUCGCCugauGGUCGAGUuccUCGCCAcCCa -3'
miRNA:   3'- -CCAGUGG----CUAGCUCGuc-GGCGGUaGG- -5'
16253 3' -56.4 NC_004084.1 + 7098 0.7 0.444021
Target:  5'- cGGgcgCACuCGAUCGccuCGGUCGCCGUCUu -3'
miRNA:   3'- -CCa--GUG-GCUAGCuc-GUCGGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 49188 0.7 0.483131
Target:  5'- uGGaCGCCcuGAUCGAGCAG--GUCAUCCa -3'
miRNA:   3'- -CCaGUGG--CUAGCUCGUCggCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 10241 0.7 0.483131
Target:  5'- aGGUCGCCuggUGAgucGCGGUCGgCGUCCg -3'
miRNA:   3'- -CCAGUGGcuaGCU---CGUCGGCgGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 5610 0.69 0.503299
Target:  5'- uGGUCAgccaUCGGUCGgaaccuccugaAGCAGCCGC--UCCu -3'
miRNA:   3'- -CCAGU----GGCUAGC-----------UCGUCGGCGguAGG- -5'
16253 3' -56.4 NC_004084.1 + 34943 0.69 0.503299
Target:  5'- -cUCGCUGAUCGAGUccaUCGCgGUCCg -3'
miRNA:   3'- ccAGUGGCUAGCUCGuc-GGCGgUAGG- -5'
16253 3' -56.4 NC_004084.1 + 41800 0.69 0.513519
Target:  5'- cGUCACgauCGAccUCGAGgAGcCCGCCggGUCCg -3'
miRNA:   3'- cCAGUG---GCU--AGCUCgUC-GGCGG--UAGG- -5'
16253 3' -56.4 NC_004084.1 + 33738 0.69 0.513519
Target:  5'- -uUCGCCag-CGAGCGGCagCGCUGUCCc -3'
miRNA:   3'- ccAGUGGcuaGCUCGUCG--GCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 27528 0.69 0.513519
Target:  5'- gGGgagaucgCGCCGuuGUCGAGaAGCuCGCCAUCg -3'
miRNA:   3'- -CCa------GUGGC--UAGCUCgUCG-GCGGUAGg -5'
16253 3' -56.4 NC_004084.1 + 23837 0.69 0.513519
Target:  5'- cGUCG-CGAUgGAgGCAGUCGCCG-CCa -3'
miRNA:   3'- cCAGUgGCUAgCU-CGUCGGCGGUaGG- -5'
16253 3' -56.4 NC_004084.1 + 5263 0.69 0.517632
Target:  5'- aGUCAUCGGccUCGucgacgacgucccgcAGCGGaugguCCGCCAUCCa -3'
miRNA:   3'- cCAGUGGCU--AGC---------------UCGUC-----GGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 2316 0.69 0.523825
Target:  5'- -cUCGCCGGagaucuugUUGAGCuccuGCCGCCAgagucgucguUCCg -3'
miRNA:   3'- ccAGUGGCU--------AGCUCGu---CGGCGGU----------AGG- -5'
16253 3' -56.4 NC_004084.1 + 514 0.68 0.544662
Target:  5'- cGGUCGgacuUCGAU-GAGCGGuUCGCCcgCCg -3'
miRNA:   3'- -CCAGU----GGCUAgCUCGUC-GGCGGuaGG- -5'
16253 3' -56.4 NC_004084.1 + 22818 0.68 0.544662
Target:  5'- cGUCACgGAUCGAuccGUucgAGCCGCCGa-- -3'
miRNA:   3'- cCAGUGgCUAGCU---CG---UCGGCGGUagg -5'
16253 3' -56.4 NC_004084.1 + 1408 0.68 0.544662
Target:  5'- -aUCACCGGcgUCGccauucucGGC-GUCGCCGUCCu -3'
miRNA:   3'- ccAGUGGCU--AGC--------UCGuCGGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 57127 0.68 0.555182
Target:  5'- -aUCACUcAUCGAGCgAGCCgGgCAUCCc -3'
miRNA:   3'- ccAGUGGcUAGCUCG-UCGG-CgGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 18716 0.68 0.559407
Target:  5'- cGUCGCCGucacuggcggguucgGUCGAGCcGuuGCCcugCCa -3'
miRNA:   3'- cCAGUGGC---------------UAGCUCGuCggCGGua-GG- -5'
16253 3' -56.4 NC_004084.1 + 35042 0.68 0.575327
Target:  5'- -cUCAUCGAugaUCGccugauaccggcaGGCGGUCGCCAUCg -3'
miRNA:   3'- ccAGUGGCU---AGC-------------UCGUCGGCGGUAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.