miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16253 3' -56.4 NC_004084.1 + 56694 1.14 0.000437
Target:  5'- cGGUCACCGAUCGAGCAGCCGCCAUCCu -3'
miRNA:   3'- -CCAGUGGCUAGCUCGUCGGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 48386 0.82 0.074895
Target:  5'- aGGUCACCG-UCGAcgcggcaucGUGGCCGCCAUCUc -3'
miRNA:   3'- -CCAGUGGCuAGCU---------CGUCGGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 43552 0.8 0.113769
Target:  5'- cGG-CACCGAgacCG-GCGGCCGUCAUCCc -3'
miRNA:   3'- -CCaGUGGCUa--GCuCGUCGGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 47337 0.78 0.160693
Target:  5'- cGUCGCCGAccucaagcacauguUCGucGGCGGCCGCCccuucGUCCg -3'
miRNA:   3'- cCAGUGGCU--------------AGC--UCGUCGGCGG-----UAGG- -5'
16253 3' -56.4 NC_004084.1 + 21583 0.77 0.170873
Target:  5'- cGUCACCGAUgcaaccggCGAGCAGCUGgaCCGUCUc -3'
miRNA:   3'- cCAGUGGCUA--------GCUCGUCGGC--GGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 50957 0.77 0.18019
Target:  5'- cGUCGCCGcUCGAGUcGCCGUCGgacUCCg -3'
miRNA:   3'- cCAGUGGCuAGCUCGuCGGCGGU---AGG- -5'
16253 3' -56.4 NC_004084.1 + 30888 0.76 0.216417
Target:  5'- cGGcCACCGGUCcauccaGGUAGCCGUgGUCCu -3'
miRNA:   3'- -CCaGUGGCUAGc-----UCGUCGGCGgUAGG- -5'
16253 3' -56.4 NC_004084.1 + 28324 0.75 0.222075
Target:  5'- --gCACC--UCGAGCucGCCGCCGUCCu -3'
miRNA:   3'- ccaGUGGcuAGCUCGu-CGGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 41805 0.75 0.233768
Target:  5'- cGGUCuuccacagACCGAUCagcgcAGCAGUCGCCGcUCCg -3'
miRNA:   3'- -CCAG--------UGGCUAGc----UCGUCGGCGGU-AGG- -5'
16253 3' -56.4 NC_004084.1 + 47908 0.75 0.245974
Target:  5'- cGGUCGCUccgCGAGguGCCGCgCgAUCCa -3'
miRNA:   3'- -CCAGUGGcuaGCUCguCGGCG-G-UAGG- -5'
16253 3' -56.4 NC_004084.1 + 22436 0.74 0.278111
Target:  5'- cGGUCggagacgaGCUGAUCGAGUcgggacuggucacGGCCGCCGaCCc -3'
miRNA:   3'- -CCAG--------UGGCUAGCUCG-------------UCGGCGGUaGG- -5'
16253 3' -56.4 NC_004084.1 + 25011 0.74 0.278801
Target:  5'- ---aGCCuaucUCGAGCAGCCGCCcgAUCCa -3'
miRNA:   3'- ccagUGGcu--AGCUCGUCGGCGG--UAGG- -5'
16253 3' -56.4 NC_004084.1 + 42726 0.73 0.32268
Target:  5'- cGUCACCGAUcgCGAGCAGgCGaaggaCAUCg -3'
miRNA:   3'- cCAGUGGCUA--GCUCGUCgGCg----GUAGg -5'
16253 3' -56.4 NC_004084.1 + 12668 0.73 0.32268
Target:  5'- cGUC-CCGAUCGAGCggacugguucguAGCCGaCCAgcaCCg -3'
miRNA:   3'- cCAGuGGCUAGCUCG------------UCGGC-GGUa--GG- -5'
16253 3' -56.4 NC_004084.1 + 35949 0.73 0.330475
Target:  5'- cGUCGCCGGggUCG-GCGGCCGUgaccaGUCCc -3'
miRNA:   3'- cCAGUGGCU--AGCuCGUCGGCGg----UAGG- -5'
16253 3' -56.4 NC_004084.1 + 13611 0.72 0.371512
Target:  5'- cGUCACCGAcCGGGUGGUCGggaCCGUCg -3'
miRNA:   3'- cCAGUGGCUaGCUCGUCGGC---GGUAGg -5'
16253 3' -56.4 NC_004084.1 + 48545 0.71 0.380125
Target:  5'- cGGUCGCCGAcucuuccgcCGGGCucccgcgugAGCCGCCcucgCCg -3'
miRNA:   3'- -CCAGUGGCUa--------GCUCG---------UCGGCGGua--GG- -5'
16253 3' -56.4 NC_004084.1 + 23272 0.71 0.388871
Target:  5'- cGGUCuggaGAcCGAGCGGCCGaCCAgUCCc -3'
miRNA:   3'- -CCAGugg-CUaGCUCGUCGGC-GGU-AGG- -5'
16253 3' -56.4 NC_004084.1 + 18860 0.71 0.397748
Target:  5'- cGGUC-CCGGUCGAGUcgaucgcGCUGgCCAUCa -3'
miRNA:   3'- -CCAGuGGCUAGCUCGu------CGGC-GGUAGg -5'
16253 3' -56.4 NC_004084.1 + 5560 0.71 0.397748
Target:  5'- cGG-CACCGcUCGAGCAGaUCGUCAacugCCg -3'
miRNA:   3'- -CCaGUGGCuAGCUCGUC-GGCGGUa---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.