miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16253 3' -56.4 NC_004084.1 + 514 0.68 0.544662
Target:  5'- cGGUCGgacuUCGAU-GAGCGGuUCGCCcgCCg -3'
miRNA:   3'- -CCAGU----GGCUAgCUCGUC-GGCGGuaGG- -5'
16253 3' -56.4 NC_004084.1 + 981 0.67 0.619274
Target:  5'- uGUCGCUGAguUCGAGguGuuGuCCA-CCu -3'
miRNA:   3'- cCAGUGGCU--AGCUCguCggC-GGUaGG- -5'
16253 3' -56.4 NC_004084.1 + 1408 0.68 0.544662
Target:  5'- -aUCACCGGcgUCGccauucucGGC-GUCGCCGUCCu -3'
miRNA:   3'- ccAGUGGCU--AGC--------UCGuCGGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 1539 0.68 0.587066
Target:  5'- cGGUCuggACCGAggCGA-CGGCCGUCGagCCg -3'
miRNA:   3'- -CCAG---UGGCUa-GCUcGUCGGCGGUa-GG- -5'
16253 3' -56.4 NC_004084.1 + 2316 0.69 0.523825
Target:  5'- -cUCGCCGGagaucuugUUGAGCuccuGCCGCCAgagucgucguUCCg -3'
miRNA:   3'- ccAGUGGCU--------AGCUCGu---CGGCGGU----------AGG- -5'
16253 3' -56.4 NC_004084.1 + 4834 0.66 0.715444
Target:  5'- -cUCGCCGAUCGucGCgAGCa--CAUCCg -3'
miRNA:   3'- ccAGUGGCUAGCu-CG-UCGgcgGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 5263 0.69 0.517632
Target:  5'- aGUCAUCGGccUCGucgacgacgucccgcAGCGGaugguCCGCCAUCCa -3'
miRNA:   3'- cCAGUGGCU--AGC---------------UCGUC-----GGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 5560 0.71 0.397748
Target:  5'- cGG-CACCGcUCGAGCAGaUCGUCAacugCCg -3'
miRNA:   3'- -CCaGUGGCuAGCUCGUC-GGCGGUa---GG- -5'
16253 3' -56.4 NC_004084.1 + 5610 0.69 0.503299
Target:  5'- uGGUCAgccaUCGGUCGgaaccuccugaAGCAGCCGC--UCCu -3'
miRNA:   3'- -CCAGU----GGCUAGC-----------UCGUCGGCGguAGG- -5'
16253 3' -56.4 NC_004084.1 + 7003 0.67 0.607441
Target:  5'- uGUCGCCc-UCGAaggccucgacggcGuCGGCCGCCAUCUc -3'
miRNA:   3'- cCAGUGGcuAGCU-------------C-GUCGGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 7098 0.7 0.444021
Target:  5'- cGGgcgCACuCGAUCGccuCGGUCGCCGUCUu -3'
miRNA:   3'- -CCa--GUG-GCUAGCuc-GUCGGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 10241 0.7 0.483131
Target:  5'- aGGUCGCCuggUGAgucGCGGUCGgCGUCCg -3'
miRNA:   3'- -CCAGUGGcuaGCU---CGUCGGCgGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 10670 0.66 0.694358
Target:  5'- cGUUugCGAUCGccgGGCAGC-GaCCGUUCg -3'
miRNA:   3'- cCAGugGCUAGC---UCGUCGgC-GGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 10905 0.67 0.640813
Target:  5'- gGGUacucCCGAUCGGGgAGuUCGUCGUCUu -3'
miRNA:   3'- -CCAgu--GGCUAGCUCgUC-GGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 11046 0.66 0.704935
Target:  5'- cGUCGacgacgcggaCGAagGGGCGGCCGCCGa-- -3'
miRNA:   3'- cCAGUg---------GCUagCUCGUCGGCGGUagg -5'
16253 3' -56.4 NC_004084.1 + 12668 0.73 0.32268
Target:  5'- cGUC-CCGAUCGAGCggacugguucguAGCCGaCCAgcaCCg -3'
miRNA:   3'- cCAGuGGCUAGCUCG------------UCGGC-GGUa--GG- -5'
16253 3' -56.4 NC_004084.1 + 13611 0.72 0.371512
Target:  5'- cGUCACCGAcCGGGUGGUCGggaCCGUCg -3'
miRNA:   3'- cCAGUGGCUaGCUCGUCGGC---GGUAGg -5'
16253 3' -56.4 NC_004084.1 + 14174 0.68 0.587066
Target:  5'- cGGUCGucCCGucguagaCGAGCucccAGCCgucgGCCAUCCg -3'
miRNA:   3'- -CCAGU--GGCua-----GCUCG----UCGG----CGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 14870 0.66 0.683723
Target:  5'- cGGcCGCCGGUCucGguGCCGUgcuuCGUCa -3'
miRNA:   3'- -CCaGUGGCUAGcuCguCGGCG----GUAGg -5'
16253 3' -56.4 NC_004084.1 + 15827 0.66 0.714397
Target:  5'- cGGcUC-CUGGUCGuuguagcacgaguGGCAGCuCGCCccAUCCa -3'
miRNA:   3'- -CC-AGuGGCUAGC-------------UCGUCG-GCGG--UAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.