miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16253 3' -56.4 NC_004084.1 + 16124 0.67 0.640813
Target:  5'- cGUCGCCGAUCGugaacGGguGaCCGCgGUg- -3'
miRNA:   3'- cCAGUGGCUAGC-----UCguC-GGCGgUAgg -5'
16253 3' -56.4 NC_004084.1 + 16621 0.67 0.631119
Target:  5'- cGGUCuguggaagACCGAUCuuuucggggcggguGAcGCAGCCGCUggagugcuugguagaAUCCg -3'
miRNA:   3'- -CCAG--------UGGCUAG--------------CU-CGUCGGCGG---------------UAGG- -5'
16253 3' -56.4 NC_004084.1 + 17830 0.66 0.704935
Target:  5'- aGGUCcgagaaGCCGAgcUCGAGaCGGCCGagaUGUCg -3'
miRNA:   3'- -CCAG------UGGCU--AGCUC-GUCGGCg--GUAGg -5'
16253 3' -56.4 NC_004084.1 + 18716 0.68 0.559407
Target:  5'- cGUCGCCGucacuggcggguucgGUCGAGCcGuuGCCcugCCa -3'
miRNA:   3'- cCAGUGGC---------------UAGCUCGuCggCGGua-GG- -5'
16253 3' -56.4 NC_004084.1 + 18860 0.71 0.397748
Target:  5'- cGGUC-CCGGUCGAGUcgaucgcGCUGgCCAUCa -3'
miRNA:   3'- -CCAGuGGCUAGCUCGu------CGGC-GGUAGg -5'
16253 3' -56.4 NC_004084.1 + 20202 0.67 0.619274
Target:  5'- aGUCGCCGcAUCGAacgacagcGCGGCCGUUuuggaccucUCCg -3'
miRNA:   3'- cCAGUGGC-UAGCU--------CGUCGGCGGu--------AGG- -5'
16253 3' -56.4 NC_004084.1 + 21059 0.66 0.715444
Target:  5'- cGGcCACCGcagugcuUCGAGCuGGgCGUCGUCg -3'
miRNA:   3'- -CCaGUGGCu------AGCUCG-UCgGCGGUAGg -5'
16253 3' -56.4 NC_004084.1 + 21583 0.77 0.170873
Target:  5'- cGUCACCGAUgcaaccggCGAGCAGCUGgaCCGUCUc -3'
miRNA:   3'- cCAGUGGCUA--------GCUCGUCGGC--GGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 21796 0.67 0.608515
Target:  5'- cGUCACCGAUCaccuGGC-GCUucuCCGUCCg -3'
miRNA:   3'- cCAGUGGCUAGc---UCGuCGGc--GGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 22436 0.74 0.278111
Target:  5'- cGGUCggagacgaGCUGAUCGAGUcgggacuggucacGGCCGCCGaCCc -3'
miRNA:   3'- -CCAG--------UGGCUAGCUCG-------------UCGGCGGUaGG- -5'
16253 3' -56.4 NC_004084.1 + 22818 0.68 0.544662
Target:  5'- cGUCACgGAUCGAuccGUucgAGCCGCCGa-- -3'
miRNA:   3'- cCAGUGgCUAGCU---CG---UCGGCGGUagg -5'
16253 3' -56.4 NC_004084.1 + 23272 0.71 0.388871
Target:  5'- cGGUCuggaGAcCGAGCGGCCGaCCAgUCCc -3'
miRNA:   3'- -CCAGugg-CUaGCUCGUCGGC-GGU-AGG- -5'
16253 3' -56.4 NC_004084.1 + 23837 0.69 0.513519
Target:  5'- cGUCG-CGAUgGAgGCAGUCGCCG-CCa -3'
miRNA:   3'- cCAGUgGCUAgCU-CGUCGGCGGUaGG- -5'
16253 3' -56.4 NC_004084.1 + 25011 0.74 0.278801
Target:  5'- ---aGCCuaucUCGAGCAGCCGCCcgAUCCa -3'
miRNA:   3'- ccagUGGcu--AGCUCGUCGGCGG--UAGG- -5'
16253 3' -56.4 NC_004084.1 + 26935 0.68 0.596704
Target:  5'- uGGUUgaaaccaACCaGGUCGaAGCGaugcguGCUGCCGUCCu -3'
miRNA:   3'- -CCAG-------UGG-CUAGC-UCGU------CGGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 27528 0.69 0.513519
Target:  5'- gGGgagaucgCGCCGuuGUCGAGaAGCuCGCCAUCg -3'
miRNA:   3'- -CCa------GUGGC--UAGCUCgUCG-GCGGUAGg -5'
16253 3' -56.4 NC_004084.1 + 28324 0.75 0.222075
Target:  5'- --gCACC--UCGAGCucGCCGCCGUCCu -3'
miRNA:   3'- ccaGUGGcuAGCUCGu-CGGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 30027 0.66 0.715444
Target:  5'- --gCGCCGAUCGAggucucgcgGgGGCCGCUcgCg -3'
miRNA:   3'- ccaGUGGCUAGCU---------CgUCGGCGGuaGg -5'
16253 3' -56.4 NC_004084.1 + 30888 0.76 0.216417
Target:  5'- cGGcCACCGGUCcauccaGGUAGCCGUgGUCCu -3'
miRNA:   3'- -CCaGUGGCUAGc-----UCGUCGGCGgUAGG- -5'
16253 3' -56.4 NC_004084.1 + 31493 0.71 0.425144
Target:  5'- cGUCG-CGAUgGAgGCAGUCGCCGccUCCa -3'
miRNA:   3'- cCAGUgGCUAgCU-CGUCGGCGGU--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.