miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16253 3' -56.4 NC_004084.1 + 58100 0.68 0.597777
Target:  5'- uGGUCGCCGcgccccugcuUCGgguucucgucGGCGGUCGUCGUCg -3'
miRNA:   3'- -CCAGUGGCu---------AGC----------UCGUCGGCGGUAGg -5'
16253 3' -56.4 NC_004084.1 + 57127 0.68 0.555182
Target:  5'- -aUCACUcAUCGAGCgAGCCgGgCAUCCc -3'
miRNA:   3'- ccAGUGGcUAGCUCG-UCGG-CgGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 56694 1.14 0.000437
Target:  5'- cGGUCACCGAUCGAGCAGCCGCCAUCCu -3'
miRNA:   3'- -CCAGUGGCUAGCUCGUCGGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 56611 0.67 0.608515
Target:  5'- cGUCGCCGGUCG-GCgAGuUCGCCGgaUCg -3'
miRNA:   3'- cCAGUGGCUAGCuCG-UC-GGCGGU--AGg -5'
16253 3' -56.4 NC_004084.1 + 55991 0.7 0.434523
Target:  5'- -aUCGCCGAUggCGAGCaucgcuggcgAGCCGCCAa-- -3'
miRNA:   3'- ccAGUGGCUA--GCUCG----------UCGGCGGUagg -5'
16253 3' -56.4 NC_004084.1 + 54567 0.67 0.662322
Target:  5'- uGGaCACCGAgguucCGGuGgAGCCGUCGUCg -3'
miRNA:   3'- -CCaGUGGCUa----GCU-CgUCGGCGGUAGg -5'
16253 3' -56.4 NC_004084.1 + 54124 0.68 0.576392
Target:  5'- aGGUCGCCG-UCGGcuucCAGCaccugaCGCCGUUCg -3'
miRNA:   3'- -CCAGUGGCuAGCUc---GUCG------GCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 53377 0.68 0.597777
Target:  5'- aGUCGuCCGu----GUAGUCGCCAUCCu -3'
miRNA:   3'- cCAGU-GGCuagcuCGUCGGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 52885 0.7 0.434523
Target:  5'- gGGUCGCCugauGGUCGAGUuccUCGCCAcCCa -3'
miRNA:   3'- -CCAGUGG----CUAGCUCGuc-GGCGGUaGG- -5'
16253 3' -56.4 NC_004084.1 + 51926 0.68 0.576392
Target:  5'- cGG-CACCG-UCGGGC-GCCGUCuUCUc -3'
miRNA:   3'- -CCaGUGGCuAGCUCGuCGGCGGuAGG- -5'
16253 3' -56.4 NC_004084.1 + 51215 0.67 0.640813
Target:  5'- gGGcUACUGGgcguggugcgUCGAGCAGCuCGaCGUCCg -3'
miRNA:   3'- -CCaGUGGCU----------AGCUCGUCG-GCgGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 51157 0.66 0.704935
Target:  5'- aGGagG-CGAUCGAGaCGGUCGCCGagCa -3'
miRNA:   3'- -CCagUgGCUAGCUC-GUCGGCGGUagG- -5'
16253 3' -56.4 NC_004084.1 + 50957 0.77 0.18019
Target:  5'- cGUCGCCGcUCGAGUcGCCGUCGgacUCCg -3'
miRNA:   3'- cCAGUGGCuAGCUCGuCGGCGGU---AGG- -5'
16253 3' -56.4 NC_004084.1 + 49455 0.67 0.619274
Target:  5'- cGUCGCCGccGUCuucGUcGCCGCUGUCCu -3'
miRNA:   3'- cCAGUGGC--UAGcu-CGuCGGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 49188 0.7 0.483131
Target:  5'- uGGaCGCCcuGAUCGAGCAG--GUCAUCCa -3'
miRNA:   3'- -CCaGUGG--CUAGCUCGUCggCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 48545 0.71 0.380125
Target:  5'- cGGUCGCCGAcucuuccgcCGGGCucccgcgugAGCCGCCcucgCCg -3'
miRNA:   3'- -CCAGUGGCUa--------GCUCG---------UCGGCGGua--GG- -5'
16253 3' -56.4 NC_004084.1 + 48386 0.82 0.074895
Target:  5'- aGGUCACCG-UCGAcgcggcaucGUGGCCGCCAUCUc -3'
miRNA:   3'- -CCAGUGGCuAGCU---------CGUCGGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 47908 0.75 0.245974
Target:  5'- cGGUCGCUccgCGAGguGCCGCgCgAUCCa -3'
miRNA:   3'- -CCAGUGGcuaGCUCguCGGCG-G-UAGG- -5'
16253 3' -56.4 NC_004084.1 + 47337 0.78 0.160693
Target:  5'- cGUCGCCGAccucaagcacauguUCGucGGCGGCCGCCccuucGUCCg -3'
miRNA:   3'- cCAGUGGCU--------------AGC--UCGUCGGCGG-----UAGG- -5'
16253 3' -56.4 NC_004084.1 + 46874 0.66 0.694358
Target:  5'- cGUUugCG-UCG-GCuGCCGCCAcgCCc -3'
miRNA:   3'- cCAGugGCuAGCuCGuCGGCGGUa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.