Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16257 | 3' | -59.9 | NC_004084.1 | + | 13111 | 0.66 | 0.51317 |
Target: 5'- gGGCGUA-GUCGACcuggaguuGCGGgCCGUCGu -3' miRNA: 3'- -UUGCGUgCAGCUGcu------CGCCgGGCAGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 31106 | 0.66 | 0.51317 |
Target: 5'- gGACGUACGUCGccaggaugaugaAC-AGCGGCgCCG-CGa -3' miRNA: 3'- -UUGCGUGCAGC------------UGcUCGCCG-GGCaGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 49582 | 0.66 | 0.522266 |
Target: 5'- -cCGCuuuuCGUCGACGAGguacuUGGCgaguucgCCGUCGa -3' miRNA: 3'- uuGCGu---GCAGCUGCUC-----GCCG-------GGCAGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 23350 | 0.68 | 0.408296 |
Target: 5'- cAGCGUcuuccgggucgACGUCGACGuuCGGaUCCGUCGc -3' miRNA: 3'- -UUGCG-----------UGCAGCUGCucGCC-GGGCAGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 38110 | 0.67 | 0.426382 |
Target: 5'- --aGUAUGUCGAUGA-UGGCCUGUUGc -3' miRNA: 3'- uugCGUGCAGCUGCUcGCCGGGCAGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 14992 | 0.67 | 0.435602 |
Target: 5'- -uCGCucaucgaGUUGACGAagaugcgcuGCGGCUCGUCGa -3' miRNA: 3'- uuGCGug-----CAGCUGCU---------CGCCGGGCAGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 38301 | 0.71 | 0.249479 |
Target: 5'- cGACGUucCGUCGACGAGCGugaCGUCGa -3' miRNA: 3'- -UUGCGu-GCAGCUGCUCGCcggGCAGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 48977 | 0.69 | 0.340961 |
Target: 5'- -uCGUcuuCGUCGACGucGCGGCCCaUCGc -3' miRNA: 3'- uuGCGu--GCAGCUGCu-CGCCGGGcAGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 8579 | 0.67 | 0.426382 |
Target: 5'- -uCGCgACGUCGACGAGUGauucgaugaaCUCGUCGa -3' miRNA: 3'- uuGCG-UGCAGCUGCUCGCc---------GGGCAGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 42002 | 0.66 | 0.47359 |
Target: 5'- cGACGC-CGUCuuugcuCGAGUGGCC-GUCGc -3' miRNA: 3'- -UUGCGuGCAGcu----GCUCGCCGGgCAGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 57641 | 0.66 | 0.503141 |
Target: 5'- -uCGCGCGucgccUCGACGAGCcgaucGGCCUGg-- -3' miRNA: 3'- uuGCGUGC-----AGCUGCUCG-----CCGGGCagc -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 30320 | 0.71 | 0.245787 |
Target: 5'- aGGCGCAccccgaaccguugacCGUCGGCGAgGUGGCCgacggCGUCGg -3' miRNA: 3'- -UUGCGU---------------GCAGCUGCU-CGCCGG-----GCAGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 9941 | 0.66 | 0.487275 |
Target: 5'- aGACGUGCGUCGGCGGgucggaguagccaauGCGGgCCUGa-- -3' miRNA: 3'- -UUGCGUGCAGCUGCU---------------CGCC-GGGCagc -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 33411 | 0.68 | 0.373601 |
Target: 5'- cGACGCACG-CGuACGAG-GGCCucaacaucgCGUCGa -3' miRNA: 3'- -UUGCGUGCaGC-UGCUCgCCGG---------GCAGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 55340 | 1.07 | 0.000648 |
Target: 5'- gAACGCACGUCGACGAGCGGCCCGUCGa -3' miRNA: 3'- -UUGCGUGCAGCUGCUCGCCGGGCAGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 27297 | 0.66 | 0.51317 |
Target: 5'- aAGCGCGCGgcUCGACGAGCuGauauucgaCCGUUc -3' miRNA: 3'- -UUGCGUGC--AGCUGCUCGcCg-------GGCAGc -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 21992 | 0.67 | 0.444936 |
Target: 5'- cGGCGUACGUCGACGAcgcGCGGa-CGaacaUCGa -3' miRNA: 3'- -UUGCGUGCAGCUGCU---CGCCggGC----AGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 29219 | 0.67 | 0.434675 |
Target: 5'- --aGCGCGUCGACGuuguucGCGGgcgaguaCUCGUCGc -3' miRNA: 3'- uugCGUGCAGCUGCu-----CGCC-------GGGCAGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 9355 | 0.67 | 0.430057 |
Target: 5'- -uCGCACGUCGACGGucacgaucuuccgauGCcGuCCCGUCc -3' miRNA: 3'- uuGCGUGCAGCUGCU---------------CGcC-GGGCAGc -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 53224 | 0.68 | 0.399435 |
Target: 5'- -uCGCAcCGUCGugucaucuACGAGCGGgCgGUCGu -3' miRNA: 3'- uuGCGU-GCAGC--------UGCUCGCCgGgCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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