Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16257 | 3' | -59.9 | NC_004084.1 | + | 55065 | 0.77 | 0.091553 |
Target: 5'- cGACGCACGUCGACGAccaaucgGCGGUucaaauCCGUCc -3' miRNA: 3'- -UUGCGUGCAGCUGCU-------CGCCG------GGCAGc -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 49023 | 0.66 | 0.51317 |
Target: 5'- --aGCGCGUCGACGugauggGGauGCCCGagGa -3' miRNA: 3'- uugCGUGCAGCUGC------UCgcCGGGCagC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 29358 | 0.66 | 0.483346 |
Target: 5'- cGCGCugGUCGACGccCGGgauCCCG-CGu -3' miRNA: 3'- uUGCGugCAGCUGCucGCC---GGGCaGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 511 | 0.67 | 0.463933 |
Target: 5'- aAGCGguCGgacuUCGAUGAGCGguucGCCCGcCGg -3' miRNA: 3'- -UUGCguGC----AGCUGCUCGC----CGGGCaGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 21992 | 0.67 | 0.444936 |
Target: 5'- cGGCGUACGUCGACGAcgcGCGGa-CGaacaUCGa -3' miRNA: 3'- -UUGCGUGCAGCUGCU---CGCCggGC----AGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 29219 | 0.67 | 0.434675 |
Target: 5'- --aGCGCGUCGACGuuguucGCGGgcgaguaCUCGUCGc -3' miRNA: 3'- uugCGUGCAGCUGCu-----CGCC-------GGGCAGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 9355 | 0.67 | 0.430057 |
Target: 5'- -uCGCACGUCGACGGucacgaucuuccgauGCcGuCCCGUCc -3' miRNA: 3'- uuGCGUGCAGCUGCU---------------CGcC-GGGCAGc -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 53224 | 0.68 | 0.399435 |
Target: 5'- -uCGCAcCGUCGugucaucuACGAGCGGgCgGUCGu -3' miRNA: 3'- uuGCGU-GCAGC--------UGCUCGCCgGgCAGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 18834 | 0.68 | 0.382085 |
Target: 5'- aAGCGCGCccgggaccucGUCGACGAGCuGCUCGa-- -3' miRNA: 3'- -UUGCGUG----------CAGCUGCUCGcCGGGCagc -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 40943 | 0.68 | 0.382085 |
Target: 5'- gGACGgACGUCGcgaACGAGUugauCCCGUCGa -3' miRNA: 3'- -UUGCgUGCAGC---UGCUCGcc--GGGCAGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 30411 | 0.69 | 0.325433 |
Target: 5'- --aGCcgACGUCGACGGGCGGCgaCGgaagCGa -3' miRNA: 3'- uugCG--UGCAGCUGCUCGCCGg-GCa---GC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 41078 | 0.76 | 0.11413 |
Target: 5'- --aGUACGUCGACGAgacgauGCGGgCCGUCGc -3' miRNA: 3'- uugCGUGCAGCUGCU------CGCCgGGCAGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 30839 | 0.74 | 0.157251 |
Target: 5'- -uCGCgACGUCGAaagaggUGGGCGGCCCGcUCGu -3' miRNA: 3'- uuGCG-UGCAGCU------GCUCGCCGGGC-AGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 26975 | 0.73 | 0.198242 |
Target: 5'- -cCGCugGUCGACaGAgaccagauccaucGCGGCCgCGUCGu -3' miRNA: 3'- uuGCGugCAGCUG-CU-------------CGCCGG-GCAGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 44942 | 0.72 | 0.231475 |
Target: 5'- uGACGUuCGUCGACGAGaaCGGCguUCGUCGc -3' miRNA: 3'- -UUGCGuGCAGCUGCUC--GCCG--GGCAGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 3067 | 0.7 | 0.288936 |
Target: 5'- gAACu--CGUCGACGGGCcGCUCGUCGa -3' miRNA: 3'- -UUGcguGCAGCUGCUCGcCGGGCAGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 39837 | 0.7 | 0.288936 |
Target: 5'- uGGCGCuCGaguccaUCGGCGGccGCGGCgCCGUCGa -3' miRNA: 3'- -UUGCGuGC------AGCUGCU--CGCCG-GGCAGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 9997 | 0.7 | 0.308231 |
Target: 5'- cGACG-ACGUCGACGAagaucuccgagaugGCGGCCacgaugccgCGUCGa -3' miRNA: 3'- -UUGCgUGCAGCUGCU--------------CGCCGG---------GCAGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 55340 | 1.07 | 0.000648 |
Target: 5'- gAACGCACGUCGACGAGCGGCCCGUCGa -3' miRNA: 3'- -UUGCGUGCAGCUGCUCGCCGGGCAGC- -5' |
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16257 | 3' | -59.9 | NC_004084.1 | + | 31106 | 0.66 | 0.51317 |
Target: 5'- gGACGUACGUCGccaggaugaugaAC-AGCGGCgCCG-CGa -3' miRNA: 3'- -UUGCGUGCAGC------------UGcUCGCCG-GGCaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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