miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16257 3' -59.9 NC_004084.1 + 33411 0.68 0.373601
Target:  5'- cGACGCACG-CGuACGAG-GGCCucaacaucgCGUCGa -3'
miRNA:   3'- -UUGCGUGCaGC-UGCUCgCCGG---------GCAGC- -5'
16257 3' -59.9 NC_004084.1 + 48977 0.69 0.340961
Target:  5'- -uCGUcuuCGUCGACGucGCGGCCCaUCGc -3'
miRNA:   3'- uuGCGu--GCAGCUGCu-CGCCGGGcAGC- -5'
16257 3' -59.9 NC_004084.1 + 38301 0.71 0.249479
Target:  5'- cGACGUucCGUCGACGAGCGugaCGUCGa -3'
miRNA:   3'- -UUGCGu-GCAGCUGCUCGCcggGCAGC- -5'
16257 3' -59.9 NC_004084.1 + 30320 0.71 0.245787
Target:  5'- aGGCGCAccccgaaccguugacCGUCGGCGAgGUGGCCgacggCGUCGg -3'
miRNA:   3'- -UUGCGU---------------GCAGCUGCU-CGCCGG-----GCAGC- -5'
16257 3' -59.9 NC_004084.1 + 38110 0.67 0.426382
Target:  5'- --aGUAUGUCGAUGA-UGGCCUGUUGc -3'
miRNA:   3'- uugCGUGCAGCUGCUcGCCGGGCAGC- -5'
16257 3' -59.9 NC_004084.1 + 14992 0.67 0.435602
Target:  5'- -uCGCucaucgaGUUGACGAagaugcgcuGCGGCUCGUCGa -3'
miRNA:   3'- uuGCGug-----CAGCUGCU---------CGCCGGGCAGC- -5'
16257 3' -59.9 NC_004084.1 + 42002 0.66 0.47359
Target:  5'- cGACGC-CGUCuuugcuCGAGUGGCC-GUCGc -3'
miRNA:   3'- -UUGCGuGCAGcu----GCUCGCCGGgCAGC- -5'
16257 3' -59.9 NC_004084.1 + 9941 0.66 0.487275
Target:  5'- aGACGUGCGUCGGCGGgucggaguagccaauGCGGgCCUGa-- -3'
miRNA:   3'- -UUGCGUGCAGCUGCU---------------CGCC-GGGCagc -5'
16257 3' -59.9 NC_004084.1 + 57641 0.66 0.503141
Target:  5'- -uCGCGCGucgccUCGACGAGCcgaucGGCCUGg-- -3'
miRNA:   3'- uuGCGUGC-----AGCUGCUCG-----CCGGGCagc -5'
16257 3' -59.9 NC_004084.1 + 13111 0.66 0.51317
Target:  5'- gGGCGUA-GUCGACcuggaguuGCGGgCCGUCGu -3'
miRNA:   3'- -UUGCGUgCAGCUGcu------CGCCgGGCAGC- -5'
16257 3' -59.9 NC_004084.1 + 27297 0.66 0.51317
Target:  5'- aAGCGCGCGgcUCGACGAGCuGauauucgaCCGUUc -3'
miRNA:   3'- -UUGCGUGC--AGCUGCUCGcCg-------GGCAGc -5'
16257 3' -59.9 NC_004084.1 + 31106 0.66 0.51317
Target:  5'- gGACGUACGUCGccaggaugaugaAC-AGCGGCgCCG-CGa -3'
miRNA:   3'- -UUGCGUGCAGC------------UGcUCGCCG-GGCaGC- -5'
16257 3' -59.9 NC_004084.1 + 49582 0.66 0.522266
Target:  5'- -cCGCuuuuCGUCGACGAGguacuUGGCgaguucgCCGUCGa -3'
miRNA:   3'- uuGCGu---GCAGCUGCUC-----GCCG-------GGCAGC- -5'
16257 3' -59.9 NC_004084.1 + 55340 1.07 0.000648
Target:  5'- gAACGCACGUCGACGAGCGGCCCGUCGa -3'
miRNA:   3'- -UUGCGUGCAGCUGCUCGCCGGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.