miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16257 3' -59.9 NC_004084.1 + 38110 0.67 0.426382
Target:  5'- --aGUAUGUCGAUGA-UGGCCUGUUGc -3'
miRNA:   3'- uugCGUGCAGCUGCUcGCCGGGCAGC- -5'
16257 3' -59.9 NC_004084.1 + 38301 0.71 0.249479
Target:  5'- cGACGUucCGUCGACGAGCGugaCGUCGa -3'
miRNA:   3'- -UUGCGu-GCAGCUGCUCGCcggGCAGC- -5'
16257 3' -59.9 NC_004084.1 + 39837 0.7 0.288936
Target:  5'- uGGCGCuCGaguccaUCGGCGGccGCGGCgCCGUCGa -3'
miRNA:   3'- -UUGCGuGC------AGCUGCU--CGCCG-GGCAGC- -5'
16257 3' -59.9 NC_004084.1 + 40943 0.68 0.382085
Target:  5'- gGACGgACGUCGcgaACGAGUugauCCCGUCGa -3'
miRNA:   3'- -UUGCgUGCAGC---UGCUCGcc--GGGCAGC- -5'
16257 3' -59.9 NC_004084.1 + 41078 0.76 0.11413
Target:  5'- --aGUACGUCGACGAgacgauGCGGgCCGUCGc -3'
miRNA:   3'- uugCGUGCAGCUGCU------CGCCgGGCAGC- -5'
16257 3' -59.9 NC_004084.1 + 42002 0.66 0.47359
Target:  5'- cGACGC-CGUCuuugcuCGAGUGGCC-GUCGc -3'
miRNA:   3'- -UUGCGuGCAGcu----GCUCGCCGGgCAGC- -5'
16257 3' -59.9 NC_004084.1 + 44942 0.72 0.231475
Target:  5'- uGACGUuCGUCGACGAGaaCGGCguUCGUCGc -3'
miRNA:   3'- -UUGCGuGCAGCUGCUC--GCCG--GGCAGC- -5'
16257 3' -59.9 NC_004084.1 + 48977 0.69 0.340961
Target:  5'- -uCGUcuuCGUCGACGucGCGGCCCaUCGc -3'
miRNA:   3'- uuGCGu--GCAGCUGCu-CGCCGGGcAGC- -5'
16257 3' -59.9 NC_004084.1 + 49023 0.66 0.51317
Target:  5'- --aGCGCGUCGACGugauggGGauGCCCGagGa -3'
miRNA:   3'- uugCGUGCAGCUGC------UCgcCGGGCagC- -5'
16257 3' -59.9 NC_004084.1 + 49582 0.66 0.522266
Target:  5'- -cCGCuuuuCGUCGACGAGguacuUGGCgaguucgCCGUCGa -3'
miRNA:   3'- uuGCGu---GCAGCUGCUC-----GCCG-------GGCAGC- -5'
16257 3' -59.9 NC_004084.1 + 53224 0.68 0.399435
Target:  5'- -uCGCAcCGUCGugucaucuACGAGCGGgCgGUCGu -3'
miRNA:   3'- uuGCGU-GCAGC--------UGCUCGCCgGgCAGC- -5'
16257 3' -59.9 NC_004084.1 + 55065 0.77 0.091553
Target:  5'- cGACGCACGUCGACGAccaaucgGCGGUucaaauCCGUCc -3'
miRNA:   3'- -UUGCGUGCAGCUGCU-------CGCCG------GGCAGc -5'
16257 3' -59.9 NC_004084.1 + 55340 1.07 0.000648
Target:  5'- gAACGCACGUCGACGAGCGGCCCGUCGa -3'
miRNA:   3'- -UUGCGUGCAGCUGCUCGCCGGGCAGC- -5'
16257 3' -59.9 NC_004084.1 + 57641 0.66 0.503141
Target:  5'- -uCGCGCGucgccUCGACGAGCcgaucGGCCUGg-- -3'
miRNA:   3'- uuGCGUGC-----AGCUGCUCG-----CCGGGCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.