miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16259 3' -55.4 NC_004084.1 + 27983 0.68 0.66419
Target:  5'- -gGACGUCgUCCUCGccaUCGcUUCCGucGCCg -3'
miRNA:   3'- ugCUGCGG-AGGAGC---AGCuAAGGC--UGG- -5'
16259 3' -55.4 NC_004084.1 + 28135 0.66 0.778098
Target:  5'- aAUGACGuCCUCgUC-UCGAUacUUCGGCUg -3'
miRNA:   3'- -UGCUGC-GGAGgAGcAGCUA--AGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 29348 0.68 0.66419
Target:  5'- gACGACGCCcCCgagCGggCGGU-CgCGGCCu -3'
miRNA:   3'- -UGCUGCGGaGGa--GCa-GCUAaG-GCUGG- -5'
16259 3' -55.4 NC_004084.1 + 30845 0.66 0.737955
Target:  5'- aGCGACgcuGCCUCCUgG-CGAccgUCCGggagGCCc -3'
miRNA:   3'- -UGCUG---CGGAGGAgCaGCUa--AGGC----UGG- -5'
16259 3' -55.4 NC_004084.1 + 30943 0.68 0.621177
Target:  5'- uCGACGUCgagCUCGagGAcgCCGACCg -3'
miRNA:   3'- uGCUGCGGag-GAGCagCUaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 31132 0.74 0.348081
Target:  5'- aGCGGCGCCgcgaUCGUcagCGGUUCgGACCg -3'
miRNA:   3'- -UGCUGCGGagg-AGCA---GCUAAGgCUGG- -5'
16259 3' -55.4 NC_004084.1 + 32222 0.66 0.748171
Target:  5'- -aGAUG-CUCCUCGaCGAcgCCGACg -3'
miRNA:   3'- ugCUGCgGAGGAGCaGCUaaGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 32355 0.71 0.495037
Target:  5'- uUGACGUCUCCUCGUacagCGGUgagaCGACg -3'
miRNA:   3'- uGCUGCGGAGGAGCA----GCUAag--GCUGg -5'
16259 3' -55.4 NC_004084.1 + 35051 0.7 0.546569
Target:  5'- cGCGACGgaUCCgaaCGUCGAcgUCGACCc -3'
miRNA:   3'- -UGCUGCggAGGa--GCAGCUaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 35284 0.69 0.587911
Target:  5'- uCGGCGCUggggaggUCCUCGaucguuUCGAcggucaccuUUCCGGCCu -3'
miRNA:   3'- uGCUGCGG-------AGGAGC------AGCU---------AAGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 35341 0.7 0.546569
Target:  5'- cCGACGUCcaCCUCGUCGcgucgCCGGCg -3'
miRNA:   3'- uGCUGCGGa-GGAGCAGCuaa--GGCUGg -5'
16259 3' -55.4 NC_004084.1 + 35370 0.66 0.748171
Target:  5'- aACGACGCCacugCCgucagUGUCGAagcUCCaGAUCa -3'
miRNA:   3'- -UGCUGCGGa---GGa----GCAGCUa--AGG-CUGG- -5'
16259 3' -55.4 NC_004084.1 + 36486 0.71 0.47405
Target:  5'- -gGACGCCgacaauuUCCUCGacgucgaacUCGAUgaggaggCCGACCg -3'
miRNA:   3'- ugCUGCGG-------AGGAGC---------AGCUAa------GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 36641 0.66 0.768253
Target:  5'- gUGACgGCC-CCgaCGUCGAUgccgCCGAUCc -3'
miRNA:   3'- uGCUG-CGGaGGa-GCAGCUAa---GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 36700 0.68 0.631939
Target:  5'- gAUGACGUCgcggaUCUCGUCGAcggucgCCGACg -3'
miRNA:   3'- -UGCUGCGGa----GGAGCAGCUaa----GGCUGg -5'
16259 3' -55.4 NC_004084.1 + 37038 0.66 0.768253
Target:  5'- uCGcCGCCUCacggUCGUCGAUgUCGAUg -3'
miRNA:   3'- uGCuGCGGAGg---AGCAGCUAaGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 37076 0.77 0.229078
Target:  5'- uCGAgGuCCUCCUCGUCaGUaCCGACCu -3'
miRNA:   3'- uGCUgC-GGAGGAGCAGcUAaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 37323 0.71 0.465194
Target:  5'- gACGACGCUgaacgCUUCGgCGAUcCCGACg -3'
miRNA:   3'- -UGCUGCGGa----GGAGCaGCUAaGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 38782 0.68 0.62871
Target:  5'- -gGACGCCaUCgUCGUCGAgccggaacucgcuccCCGACUc -3'
miRNA:   3'- ugCUGCGG-AGgAGCAGCUaa-------------GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 39525 0.66 0.748171
Target:  5'- cGCGACGUccucgaggauCUCCUCGUgauggccagcgCGAUcgacUCGACCg -3'
miRNA:   3'- -UGCUGCG----------GAGGAGCA-----------GCUAa---GGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.