miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16259 3' -55.4 NC_004084.1 + 12753 0.7 0.515407
Target:  5'- uCGACGCCgaccgUCUCGUCGuugUCGGCa -3'
miRNA:   3'- uGCUGCGGa----GGAGCAGCuaaGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 13558 0.75 0.280202
Target:  5'- aGCGACGuCCUCCUggaaGUCGcgggccgaUCCGACCu -3'
miRNA:   3'- -UGCUGC-GGAGGAg---CAGCua------AGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 14475 0.69 0.567674
Target:  5'- -aGGcCGCCUCCUgagCGUCGGcUCCuGCCu -3'
miRNA:   3'- ugCU-GCGGAGGA---GCAGCUaAGGcUGG- -5'
16259 3' -55.4 NC_004084.1 + 16034 0.67 0.702524
Target:  5'- cGCGG-GCCUCCUCGagGAUgcguugcucccgcUCGGCCu -3'
miRNA:   3'- -UGCUgCGGAGGAGCagCUAa------------GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 16078 0.7 0.546569
Target:  5'- uCGAguucCGCCgCCUCGUCGAUcucgucCCGACg -3'
miRNA:   3'- uGCU----GCGGaGGAGCAGCUAa-----GGCUGg -5'
16259 3' -55.4 NC_004084.1 + 16146 0.66 0.758274
Target:  5'- gACGAacUGCg-CgUCGUCGcgUCCGAUCu -3'
miRNA:   3'- -UGCU--GCGgaGgAGCAGCuaAGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 16388 0.66 0.787799
Target:  5'- gACGAUGUCgaccgCCUCGcUCGcga-CGGCCa -3'
miRNA:   3'- -UGCUGCGGa----GGAGC-AGCuaagGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 16637 0.71 0.484989
Target:  5'- gUGACGcCCUCgUCGUCGAcgUCGuCCg -3'
miRNA:   3'- uGCUGC-GGAGgAGCAGCUaaGGCuGG- -5'
16259 3' -55.4 NC_004084.1 + 16688 0.67 0.717229
Target:  5'- aGCGGgGCCUCgaCGUUGG-UCgCGAUCg -3'
miRNA:   3'- -UGCUgCGGAGgaGCAGCUaAG-GCUGG- -5'
16259 3' -55.4 NC_004084.1 + 17332 0.66 0.778098
Target:  5'- gGCGACgGCCcgcaucgUCUCGUCGAcguacucgCgGACCg -3'
miRNA:   3'- -UGCUG-CGGa------GGAGCAGCUaa------GgCUGG- -5'
16259 3' -55.4 NC_004084.1 + 18260 0.66 0.737955
Target:  5'- gAUGACGUCUUCgaaccggucgaCGUUGAggCCGAUCa -3'
miRNA:   3'- -UGCUGCGGAGGa----------GCAGCUaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 18784 0.68 0.638397
Target:  5'- uCGGCGUCgcguacgaucgaCUCGUCGAggacgucgCCGGCCa -3'
miRNA:   3'- uGCUGCGGag----------GAGCAGCUaa------GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 19199 0.67 0.727638
Target:  5'- gACGACGUCUCCgacagaGAUgucgCCGugCg -3'
miRNA:   3'- -UGCUGCGGAGGagcag-CUAa---GGCugG- -5'
16259 3' -55.4 NC_004084.1 + 19674 0.7 0.536109
Target:  5'- gACG-UGCCUCCccUgGUCG-UUCUGGCCg -3'
miRNA:   3'- -UGCuGCGGAGG--AgCAGCuAAGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 21895 0.69 0.575112
Target:  5'- cGCGAUcggcgucucggucgGCCUCCUCaUCGAgUUCGACg -3'
miRNA:   3'- -UGCUG--------------CGGAGGAGcAGCUaAGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 22156 0.66 0.758274
Target:  5'- cGCGAgCGCCUCggcgcaCUCGagGAcgUCGACCc -3'
miRNA:   3'- -UGCU-GCGGAG------GAGCagCUaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 22339 0.66 0.737955
Target:  5'- gACGGCGaCCucgucgcggUCCUCGUCGuAUcCCcACCa -3'
miRNA:   3'- -UGCUGC-GG---------AGGAGCAGC-UAaGGcUGG- -5'
16259 3' -55.4 NC_004084.1 + 22510 0.68 0.653455
Target:  5'- aACcGCGUCaUCCUCGacgaCGAUcgccUCCGGCCg -3'
miRNA:   3'- -UGcUGCGG-AGGAGCa---GCUA----AGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 27033 0.69 0.567674
Target:  5'- uCGGCGUagUCCgcccCGUCGAgUUCGACCa -3'
miRNA:   3'- uGCUGCGg-AGGa---GCAGCUaAGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 27647 0.66 0.768253
Target:  5'- cGCGuACGCCUCgaggaggUCGcUCGAcUCCGGuCCg -3'
miRNA:   3'- -UGC-UGCGGAGg------AGC-AGCUaAGGCU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.