miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16259 3' -55.4 NC_004084.1 + 811 0.66 0.768253
Target:  5'- gGCGAuCGUggaggUCCUCGUCGAUgCUGAUg -3'
miRNA:   3'- -UGCU-GCGg----AGGAGCAGCUAaGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 1619 0.73 0.390573
Target:  5'- uCGAUGaaCUCCUCGagGAggCCGACCg -3'
miRNA:   3'- uGCUGCg-GAGGAGCagCUaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 1871 0.71 0.466173
Target:  5'- gACGuCGCCUCCUggacugccacgccaaGUCGGggauggggCCGACCg -3'
miRNA:   3'- -UGCuGCGGAGGAg--------------CAGCUaa------GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 1973 0.68 0.66419
Target:  5'- aGCG-CGCCgUCgagaUCGUCG-UUCCGACg -3'
miRNA:   3'- -UGCuGCGG-AGg---AGCAGCuAAGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 2659 0.66 0.748171
Target:  5'- gUGACGCCUCgUaacCGAUUCCcuggugguucGACCg -3'
miRNA:   3'- uGCUGCGGAGgAgcaGCUAAGG----------CUGG- -5'
16259 3' -55.4 NC_004084.1 + 3074 0.67 0.70674
Target:  5'- uCGACggGCCg-CUCGUCGAcgugcgUUCCGGCg -3'
miRNA:   3'- uGCUG--CGGagGAGCAGCU------AAGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 3180 0.66 0.778098
Target:  5'- -gGAUcaCCUUgUCGUCGGUUCCGAg- -3'
miRNA:   3'- ugCUGc-GGAGgAGCAGCUAAGGCUgg -5'
16259 3' -55.4 NC_004084.1 + 3812 0.72 0.445826
Target:  5'- aACGGCGaCCucgauccagUCUUCGUCGAcgCCGACg -3'
miRNA:   3'- -UGCUGC-GG---------AGGAGCAGCUaaGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 4180 0.72 0.417643
Target:  5'- gACGGCGCugaucgCUCCgaCGUCGAgaUCCGACUc -3'
miRNA:   3'- -UGCUGCG------GAGGa-GCAGCUa-AGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 4247 0.68 0.66419
Target:  5'- gACGugGUCgCCUCGUUGcUUCUcGCCc -3'
miRNA:   3'- -UGCugCGGaGGAGCAGCuAAGGcUGG- -5'
16259 3' -55.4 NC_004084.1 + 4356 0.69 0.578306
Target:  5'- uCGccCGUCUCCUCGUCGcgcgUCCaACCg -3'
miRNA:   3'- uGCu-GCGGAGGAGCAGCua--AGGcUGG- -5'
16259 3' -55.4 NC_004084.1 + 5478 0.68 0.621177
Target:  5'- gACGACGCCgacggCCagaUCGUCGcagUCGACg -3'
miRNA:   3'- -UGCUGCGGa----GG---AGCAGCuaaGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 7272 0.71 0.455454
Target:  5'- uCGAuCGCCUCCUCGuUCGGgaUCGcCCa -3'
miRNA:   3'- uGCU-GCGGAGGAGC-AGCUaaGGCuGG- -5'
16259 3' -55.4 NC_004084.1 + 8728 0.68 0.642702
Target:  5'- uCGGCGUCacCCUCGUgGAUgucgCCGGuCCa -3'
miRNA:   3'- uGCUGCGGa-GGAGCAgCUAa---GGCU-GG- -5'
16259 3' -55.4 NC_004084.1 + 9500 0.71 0.455454
Target:  5'- cCGGCGCCgaCCggaaGUCGuggCCGACCg -3'
miRNA:   3'- uGCUGCGGa-GGag--CAGCuaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 10123 0.72 0.425985
Target:  5'- uCGACGCaCUCCggguuccgcaguUCGUCGGUucccuccUCCGGCUc -3'
miRNA:   3'- uGCUGCG-GAGG------------AGCAGCUA-------AGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 10387 0.66 0.787799
Target:  5'- uCGACGUCgagCUCGUCGucgUCCaggucgucGACCa -3'
miRNA:   3'- uGCUGCGGag-GAGCAGCua-AGG--------CUGG- -5'
16259 3' -55.4 NC_004084.1 + 11854 0.67 0.696181
Target:  5'- cGCGAUGCCga--UGcCGAgUCCGACCa -3'
miRNA:   3'- -UGCUGCGGaggaGCaGCUaAGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 12026 0.69 0.599688
Target:  5'- cCGuCGCCga-UCGUCGAUU-CGACCu -3'
miRNA:   3'- uGCuGCGGaggAGCAGCUAAgGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 12373 0.67 0.696181
Target:  5'- gAUGACGUCUCCUUGcUCGAacUCGugUu -3'
miRNA:   3'- -UGCUGCGGAGGAGC-AGCUaaGGCugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.