miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16259 3' -55.4 NC_004084.1 + 54188 1.12 0.000816
Target:  5'- aACGACGCCUCCUCGUCGAUUCCGACCg -3'
miRNA:   3'- -UGCUGCGGAGGAGCAGCUAAGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 37076 0.77 0.229078
Target:  5'- uCGAgGuCCUCCUCGUCaGUaCCGACCu -3'
miRNA:   3'- uGCUgC-GGAGGAGCAGcUAaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 13558 0.75 0.280202
Target:  5'- aGCGACGuCCUCCUggaaGUCGcgggccgaUCCGACCu -3'
miRNA:   3'- -UGCUGC-GGAGGAg---CAGCua------AGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 31132 0.74 0.348081
Target:  5'- aGCGGCGCCgcgaUCGUcagCGGUUCgGACCg -3'
miRNA:   3'- -UGCUGCGGagg-AGCA---GCUAAGgCUGG- -5'
16259 3' -55.4 NC_004084.1 + 1619 0.73 0.390573
Target:  5'- uCGAUGaaCUCCUCGagGAggCCGACCg -3'
miRNA:   3'- uGCUGCg-GAGGAGCagCUaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 4180 0.72 0.417643
Target:  5'- gACGGCGCugaucgCUCCgaCGUCGAgaUCCGACUc -3'
miRNA:   3'- -UGCUGCG------GAGGa-GCAGCUa-AGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 10123 0.72 0.425985
Target:  5'- uCGACGCaCUCCggguuccgcaguUCGUCGGUucccuccUCCGGCUc -3'
miRNA:   3'- uGCUGCG-GAGG------------AGCAGCUA-------AGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 3812 0.72 0.445826
Target:  5'- aACGGCGaCCucgauccagUCUUCGUCGAcgCCGACg -3'
miRNA:   3'- -UGCUGC-GG---------AGGAGCAGCUaaGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 7272 0.71 0.455454
Target:  5'- uCGAuCGCCUCCUCGuUCGGgaUCGcCCa -3'
miRNA:   3'- uGCU-GCGGAGGAGC-AGCUaaGGCuGG- -5'
16259 3' -55.4 NC_004084.1 + 9500 0.71 0.455454
Target:  5'- cCGGCGCCgaCCggaaGUCGuggCCGACCg -3'
miRNA:   3'- uGCUGCGGa-GGag--CAGCuaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 46731 0.71 0.459337
Target:  5'- cCGACGCCguguagacgucgcugUCCUCGccguagUCGucgCCGACCg -3'
miRNA:   3'- uGCUGCGG---------------AGGAGC------AGCuaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 37323 0.71 0.465194
Target:  5'- gACGACGCUgaacgCUUCGgCGAUcCCGACg -3'
miRNA:   3'- -UGCUGCGGa----GGAGCaGCUAaGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 1871 0.71 0.466173
Target:  5'- gACGuCGCCUCCUggacugccacgccaaGUCGGggauggggCCGACCg -3'
miRNA:   3'- -UGCuGCGGAGGAg--------------CAGCUaa------GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 36486 0.71 0.47405
Target:  5'- -gGACGCCgacaauuUCCUCGacgucgaacUCGAUgaggaggCCGACCg -3'
miRNA:   3'- ugCUGCGG-------AGGAGC---------AGCUAa------GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 16637 0.71 0.484989
Target:  5'- gUGACGcCCUCgUCGUCGAcgUCGuCCg -3'
miRNA:   3'- uGCUGC-GGAGgAGCAGCUaaGGCuGG- -5'
16259 3' -55.4 NC_004084.1 + 32355 0.71 0.495037
Target:  5'- uUGACGUCUCCUCGUacagCGGUgagaCGACg -3'
miRNA:   3'- uGCUGCGGAGGAGCA----GCUAag--GCUGg -5'
16259 3' -55.4 NC_004084.1 + 12753 0.7 0.515407
Target:  5'- uCGACGCCgaccgUCUCGUCGuugUCGGCa -3'
miRNA:   3'- uGCUGCGGa----GGAGCAGCuaaGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 57086 0.7 0.515407
Target:  5'- cCGACGgaguaCUCCUaCGUCGAgcgCCGugCu -3'
miRNA:   3'- uGCUGCg----GAGGA-GCAGCUaa-GGCugG- -5'
16259 3' -55.4 NC_004084.1 + 50268 0.7 0.515407
Target:  5'- gGCGGCGaggUCCUCGaCGucugCCGACCa -3'
miRNA:   3'- -UGCUGCgg-AGGAGCaGCuaa-GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 57524 0.7 0.52572
Target:  5'- gACGACGCCgacagCGauacCGAUUCCGACg -3'
miRNA:   3'- -UGCUGCGGagga-GCa---GCUAAGGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.