miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16259 3' -55.4 NC_004084.1 + 19674 0.7 0.536109
Target:  5'- gACG-UGCCUCCccUgGUCG-UUCUGGCCg -3'
miRNA:   3'- -UGCuGCGGAGG--AgCAGCuAAGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 35341 0.7 0.546569
Target:  5'- cCGACGUCcaCCUCGUCGcgucgCCGGCg -3'
miRNA:   3'- uGCUGCGGa-GGAGCAGCuaa--GGCUGg -5'
16259 3' -55.4 NC_004084.1 + 16078 0.7 0.546569
Target:  5'- uCGAguucCGCCgCCUCGUCGAUcucgucCCGACg -3'
miRNA:   3'- uGCU----GCGGaGGAGCAGCUAa-----GGCUGg -5'
16259 3' -55.4 NC_004084.1 + 35051 0.7 0.546569
Target:  5'- cGCGACGgaUCCgaaCGUCGAcgUCGACCc -3'
miRNA:   3'- -UGCUGCggAGGa--GCAGCUaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 52546 0.7 0.556038
Target:  5'- gUGGCGgucugcuCCUCCUCGUCGAUcgUCUuGAUCg -3'
miRNA:   3'- uGCUGC-------GGAGGAGCAGCUA--AGG-CUGG- -5'
16259 3' -55.4 NC_004084.1 + 56932 0.69 0.567674
Target:  5'- gGCGACGUCUaCCaggaggUCGUCGAUcgCCGcAUCa -3'
miRNA:   3'- -UGCUGCGGA-GG------AGCAGCUAa-GGC-UGG- -5'
16259 3' -55.4 NC_004084.1 + 27033 0.69 0.567674
Target:  5'- uCGGCGUagUCCgcccCGUCGAgUUCGACCa -3'
miRNA:   3'- uGCUGCGg-AGGa---GCAGCUaAGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 14475 0.69 0.567674
Target:  5'- -aGGcCGCCUCCUgagCGUCGGcUCCuGCCu -3'
miRNA:   3'- ugCU-GCGGAGGA---GCAGCUaAGGcUGG- -5'
16259 3' -55.4 NC_004084.1 + 21895 0.69 0.575112
Target:  5'- cGCGAUcggcgucucggucgGCCUCCUCaUCGAgUUCGACg -3'
miRNA:   3'- -UGCUG--------------CGGAGGAGcAGCUaAGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 4356 0.69 0.578306
Target:  5'- uCGccCGUCUCCUCGUCGcgcgUCCaACCg -3'
miRNA:   3'- uGCu-GCGGAGGAGCAGCua--AGGcUGG- -5'
16259 3' -55.4 NC_004084.1 + 35284 0.69 0.587911
Target:  5'- uCGGCGCUggggaggUCCUCGaucguuUCGAcggucaccuUUCCGGCCu -3'
miRNA:   3'- uGCUGCGG-------AGGAGC------AGCU---------AAGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 50605 0.69 0.58898
Target:  5'- aGCG-UGCCUCCagCGUCGAggucgUCGACg -3'
miRNA:   3'- -UGCuGCGGAGGa-GCAGCUaa---GGCUGg -5'
16259 3' -55.4 NC_004084.1 + 12026 0.69 0.599688
Target:  5'- cCGuCGCCga-UCGUCGAUU-CGACCu -3'
miRNA:   3'- uGCuGCGGaggAGCAGCUAAgGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 48406 0.69 0.609349
Target:  5'- uCGugGCCgccaucucggagaUCUUCGUCGAcgucgUCGGCCa -3'
miRNA:   3'- uGCugCGG-------------AGGAGCAGCUaa---GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 39732 0.69 0.610424
Target:  5'- cUGGCcCCagUCCUCGUCGggUCUGGCg -3'
miRNA:   3'- uGCUGcGG--AGGAGCAGCuaAGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 47037 0.69 0.610424
Target:  5'- gACGAUGCCggggagugCC-CGgacugCGGUUCUGACUg -3'
miRNA:   3'- -UGCUGCGGa-------GGaGCa----GCUAAGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 30943 0.68 0.621177
Target:  5'- uCGACGUCgagCUCGagGAcgCCGACCg -3'
miRNA:   3'- uGCUGCGGag-GAGCagCUaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 5478 0.68 0.621177
Target:  5'- gACGACGCCgacggCCagaUCGUCGcagUCGACg -3'
miRNA:   3'- -UGCUGCGGa----GG---AGCAGCuaaGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 38782 0.68 0.62871
Target:  5'- -gGACGCCaUCgUCGUCGAgccggaacucgcuccCCGACUc -3'
miRNA:   3'- ugCUGCGG-AGgAGCAGCUaa-------------GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 36700 0.68 0.631939
Target:  5'- gAUGACGUCgcggaUCUCGUCGAcggucgCCGACg -3'
miRNA:   3'- -UGCUGCGGa----GGAGCAGCUaa----GGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.