miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16259 3' -55.4 NC_004084.1 + 1871 0.71 0.466173
Target:  5'- gACGuCGCCUCCUggacugccacgccaaGUCGGggauggggCCGACCg -3'
miRNA:   3'- -UGCuGCGGAGGAg--------------CAGCUaa------GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 57086 0.7 0.515407
Target:  5'- cCGACGgaguaCUCCUaCGUCGAgcgCCGugCu -3'
miRNA:   3'- uGCUGCg----GAGGA-GCAGCUaa-GGCugG- -5'
16259 3' -55.4 NC_004084.1 + 57524 0.7 0.52572
Target:  5'- gACGACGCCgacagCGauacCGAUUCCGACg -3'
miRNA:   3'- -UGCUGCGGagga-GCa---GCUAAGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 35341 0.7 0.546569
Target:  5'- cCGACGUCcaCCUCGUCGcgucgCCGGCg -3'
miRNA:   3'- uGCUGCGGa-GGAGCAGCuaa--GGCUGg -5'
16259 3' -55.4 NC_004084.1 + 47037 0.69 0.610424
Target:  5'- gACGAUGCCggggagugCC-CGgacugCGGUUCUGACUg -3'
miRNA:   3'- -UGCUGCGGa-------GGaGCa----GCUAAGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 12026 0.69 0.599688
Target:  5'- cCGuCGCCga-UCGUCGAUU-CGACCu -3'
miRNA:   3'- uGCuGCGGaggAGCAGCUAAgGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 21895 0.69 0.575112
Target:  5'- cGCGAUcggcgucucggucgGCCUCCUCaUCGAgUUCGACg -3'
miRNA:   3'- -UGCUG--------------CGGAGGAGcAGCUaAGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 56932 0.69 0.567674
Target:  5'- gGCGACGUCUaCCaggaggUCGUCGAUcgCCGcAUCa -3'
miRNA:   3'- -UGCUGCGGA-GG------AGCAGCUAa-GGC-UGG- -5'
16259 3' -55.4 NC_004084.1 + 27033 0.69 0.567674
Target:  5'- uCGGCGUagUCCgcccCGUCGAgUUCGACCa -3'
miRNA:   3'- uGCUGCGg-AGGa---GCAGCUaAGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 35051 0.7 0.546569
Target:  5'- cGCGACGgaUCCgaaCGUCGAcgUCGACCc -3'
miRNA:   3'- -UGCUGCggAGGa--GCAGCUaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 54800 0.66 0.748171
Target:  5'- cCGAuCGCCUCgUaGUCGG-UCCaGGCCg -3'
miRNA:   3'- uGCU-GCGGAGgAgCAGCUaAGG-CUGG- -5'
16259 3' -55.4 NC_004084.1 + 35370 0.66 0.748171
Target:  5'- aACGACGCCacugCCgucagUGUCGAagcUCCaGAUCa -3'
miRNA:   3'- -UGCUGCGGa---GGa----GCAGCUa--AGG-CUGG- -5'
16259 3' -55.4 NC_004084.1 + 50551 0.66 0.758274
Target:  5'- aGCGGaGUCUCCUCGaUCaugUCCGuCCa -3'
miRNA:   3'- -UGCUgCGGAGGAGC-AGcuaAGGCuGG- -5'
16259 3' -55.4 NC_004084.1 + 811 0.66 0.768253
Target:  5'- gGCGAuCGUggaggUCCUCGUCGAUgCUGAUg -3'
miRNA:   3'- -UGCU-GCGg----AGGAGCAGCUAaGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 37038 0.66 0.768253
Target:  5'- uCGcCGCCUCacggUCGUCGAUgUCGAUg -3'
miRNA:   3'- uGCuGCGGAGg---AGCAGCUAaGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 27647 0.66 0.768253
Target:  5'- cGCGuACGCCUCgaggaggUCGcUCGAcUCCGGuCCg -3'
miRNA:   3'- -UGC-UGCGGAGg------AGC-AGCUaAGGCU-GG- -5'
16259 3' -55.4 NC_004084.1 + 3180 0.66 0.778098
Target:  5'- -gGAUcaCCUUgUCGUCGGUUCCGAg- -3'
miRNA:   3'- ugCUGc-GGAGgAGCAGCUAAGGCUgg -5'
16259 3' -55.4 NC_004084.1 + 17332 0.66 0.778098
Target:  5'- gGCGACgGCCcgcaucgUCUCGUCGAcguacucgCgGACCg -3'
miRNA:   3'- -UGCUG-CGGa------GGAGCAGCUaa------GgCUGG- -5'
16259 3' -55.4 NC_004084.1 + 48525 0.66 0.778098
Target:  5'- gACGuACGCCUUCaCGucaUCGGUcgCCGACUc -3'
miRNA:   3'- -UGC-UGCGGAGGaGC---AGCUAa-GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 54188 1.12 0.000816
Target:  5'- aACGACGCCUCCUCGUCGAUUCCGACCg -3'
miRNA:   3'- -UGCUGCGGAGGAGCAGCUAAGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.