miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16259 3' -55.4 NC_004084.1 + 35370 0.66 0.748171
Target:  5'- aACGACGCCacugCCgucagUGUCGAagcUCCaGAUCa -3'
miRNA:   3'- -UGCUGCGGa---GGa----GCAGCUa--AGG-CUGG- -5'
16259 3' -55.4 NC_004084.1 + 22339 0.66 0.737955
Target:  5'- gACGGCGaCCucgucgcggUCCUCGUCGuAUcCCcACCa -3'
miRNA:   3'- -UGCUGC-GG---------AGGAGCAGC-UAaGGcUGG- -5'
16259 3' -55.4 NC_004084.1 + 30845 0.66 0.737955
Target:  5'- aGCGACgcuGCCUCCUgG-CGAccgUCCGggagGCCc -3'
miRNA:   3'- -UGCUG---CGGAGGAgCaGCUa--AGGC----UGG- -5'
16259 3' -55.4 NC_004084.1 + 18260 0.66 0.737955
Target:  5'- gAUGACGUCUUCgaaccggucgaCGUUGAggCCGAUCa -3'
miRNA:   3'- -UGCUGCGGAGGa----------GCAGCUaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 19199 0.67 0.727638
Target:  5'- gACGACGUCUCCgacagaGAUgucgCCGugCg -3'
miRNA:   3'- -UGCUGCGGAGGagcag-CUAa---GGCugG- -5'
16259 3' -55.4 NC_004084.1 + 16688 0.67 0.717229
Target:  5'- aGCGGgGCCUCgaCGUUGG-UCgCGAUCg -3'
miRNA:   3'- -UGCUgCGGAGgaGCAGCUaAG-GCUGG- -5'
16259 3' -55.4 NC_004084.1 + 56876 0.67 0.717229
Target:  5'- uCGACgGCCgugCCUCgGUCcAgaCCGACCg -3'
miRNA:   3'- uGCUG-CGGa--GGAG-CAGcUaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 40891 0.67 0.70674
Target:  5'- gUGACGCCUUCaacaUCGAUaUCCGACg -3'
miRNA:   3'- uGCUGCGGAGGagc-AGCUA-AGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 3074 0.67 0.70674
Target:  5'- uCGACggGCCg-CUCGUCGAcgugcgUUCCGGCg -3'
miRNA:   3'- uGCUG--CGGagGAGCAGCU------AAGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 54410 0.67 0.70674
Target:  5'- uCGACGCCUCaugUCuacCGAUUCCcACCc -3'
miRNA:   3'- uGCUGCGGAGg--AGca-GCUAAGGcUGG- -5'
16259 3' -55.4 NC_004084.1 + 58198 0.67 0.70674
Target:  5'- aACGACGaCUCCccCGcCGAUggCCGugCg -3'
miRNA:   3'- -UGCUGCgGAGGa-GCaGCUAa-GGCugG- -5'
16259 3' -55.4 NC_004084.1 + 16034 0.67 0.702524
Target:  5'- cGCGG-GCCUCCUCGagGAUgcguugcucccgcUCGGCCu -3'
miRNA:   3'- -UGCUgCGGAGGAGCagCUAa------------GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 11854 0.67 0.696181
Target:  5'- cGCGAUGCCga--UGcCGAgUCCGACCa -3'
miRNA:   3'- -UGCUGCGGaggaGCaGCUaAGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 56120 0.67 0.696181
Target:  5'- gACGucguGCGCCgcagUgUCGUCGGcgUCGACCa -3'
miRNA:   3'- -UGC----UGCGGa---GgAGCAGCUaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 12373 0.67 0.696181
Target:  5'- gAUGACGUCUCCUUGcUCGAacUCGugUu -3'
miRNA:   3'- -UGCUGCGGAGGAGC-AGCUaaGGCugG- -5'
16259 3' -55.4 NC_004084.1 + 1973 0.68 0.66419
Target:  5'- aGCG-CGCCgUCgagaUCGUCG-UUCCGACg -3'
miRNA:   3'- -UGCuGCGG-AGg---AGCAGCuAAGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 51565 0.68 0.66419
Target:  5'- --aACGCCUCUcgguucguggCGUUGAgcgUCCGGCCc -3'
miRNA:   3'- ugcUGCGGAGGa---------GCAGCUa--AGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 29348 0.68 0.66419
Target:  5'- gACGACGCCcCCgagCGggCGGU-CgCGGCCu -3'
miRNA:   3'- -UGCUGCGGaGGa--GCa-GCUAaG-GCUGG- -5'
16259 3' -55.4 NC_004084.1 + 27983 0.68 0.66419
Target:  5'- -gGACGUCgUCCUCGccaUCGcUUCCGucGCCg -3'
miRNA:   3'- ugCUGCGG-AGGAGC---AGCuAAGGC--UGG- -5'
16259 3' -55.4 NC_004084.1 + 4247 0.68 0.66419
Target:  5'- gACGugGUCgCCUCGUUGcUUCUcGCCc -3'
miRNA:   3'- -UGCugCGGaGGAGCAGCuAAGGcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.