Results 41 - 60 of 86 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 22510 | 0.68 | 0.653455 |
Target: 5'- aACcGCGUCaUCCUCGacgaCGAUcgccUCCGGCCg -3' miRNA: 3'- -UGcUGCGG-AGGAGCa---GCUA----AGGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 55655 | 0.68 | 0.653455 |
Target: 5'- uCGGCGCgCUCCaccUCGUUGAUgacCUGugCg -3' miRNA: 3'- uGCUGCG-GAGG---AGCAGCUAa--GGCugG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 57782 | 0.68 | 0.653455 |
Target: 5'- gGCGAUGuCCUUCUCGUCG--UCCc-CCa -3' miRNA: 3'- -UGCUGC-GGAGGAGCAGCuaAGGcuGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 8728 | 0.68 | 0.642702 |
Target: 5'- uCGGCGUCacCCUCGUgGAUgucgCCGGuCCa -3' miRNA: 3'- uGCUGCGGa-GGAGCAgCUAa---GGCU-GG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 51270 | 0.68 | 0.642702 |
Target: 5'- gGCGaACGCUgugUCgUCGUCGAggauauccgUCGACCa -3' miRNA: 3'- -UGC-UGCGG---AGgAGCAGCUaa-------GGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 18784 | 0.68 | 0.638397 |
Target: 5'- uCGGCGUCgcguacgaucgaCUCGUCGAggacgucgCCGGCCa -3' miRNA: 3'- uGCUGCGGag----------GAGCAGCUaa------GGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 36700 | 0.68 | 0.631939 |
Target: 5'- gAUGACGUCgcggaUCUCGUCGAcggucgCCGACg -3' miRNA: 3'- -UGCUGCGGa----GGAGCAGCUaa----GGCUGg -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 38782 | 0.68 | 0.62871 |
Target: 5'- -gGACGCCaUCgUCGUCGAgccggaacucgcuccCCGACUc -3' miRNA: 3'- ugCUGCGG-AGgAGCAGCUaa-------------GGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 5478 | 0.68 | 0.621177 |
Target: 5'- gACGACGCCgacggCCagaUCGUCGcagUCGACg -3' miRNA: 3'- -UGCUGCGGa----GG---AGCAGCuaaGGCUGg -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 30943 | 0.68 | 0.621177 |
Target: 5'- uCGACGUCgagCUCGagGAcgCCGACCg -3' miRNA: 3'- uGCUGCGGag-GAGCagCUaaGGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 47037 | 0.69 | 0.610424 |
Target: 5'- gACGAUGCCggggagugCC-CGgacugCGGUUCUGACUg -3' miRNA: 3'- -UGCUGCGGa-------GGaGCa----GCUAAGGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 39732 | 0.69 | 0.610424 |
Target: 5'- cUGGCcCCagUCCUCGUCGggUCUGGCg -3' miRNA: 3'- uGCUGcGG--AGGAGCAGCuaAGGCUGg -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 48406 | 0.69 | 0.609349 |
Target: 5'- uCGugGCCgccaucucggagaUCUUCGUCGAcgucgUCGGCCa -3' miRNA: 3'- uGCugCGG-------------AGGAGCAGCUaa---GGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 12026 | 0.69 | 0.599688 |
Target: 5'- cCGuCGCCga-UCGUCGAUU-CGACCu -3' miRNA: 3'- uGCuGCGGaggAGCAGCUAAgGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 50605 | 0.69 | 0.58898 |
Target: 5'- aGCG-UGCCUCCagCGUCGAggucgUCGACg -3' miRNA: 3'- -UGCuGCGGAGGa-GCAGCUaa---GGCUGg -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 35284 | 0.69 | 0.587911 |
Target: 5'- uCGGCGCUggggaggUCCUCGaucguuUCGAcggucaccuUUCCGGCCu -3' miRNA: 3'- uGCUGCGG-------AGGAGC------AGCU---------AAGGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 4356 | 0.69 | 0.578306 |
Target: 5'- uCGccCGUCUCCUCGUCGcgcgUCCaACCg -3' miRNA: 3'- uGCu-GCGGAGGAGCAGCua--AGGcUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 21895 | 0.69 | 0.575112 |
Target: 5'- cGCGAUcggcgucucggucgGCCUCCUCaUCGAgUUCGACg -3' miRNA: 3'- -UGCUG--------------CGGAGGAGcAGCUaAGGCUGg -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 56932 | 0.69 | 0.567674 |
Target: 5'- gGCGACGUCUaCCaggaggUCGUCGAUcgCCGcAUCa -3' miRNA: 3'- -UGCUGCGGA-GG------AGCAGCUAa-GGC-UGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 27033 | 0.69 | 0.567674 |
Target: 5'- uCGGCGUagUCCgcccCGUCGAgUUCGACCa -3' miRNA: 3'- uGCUGCGg-AGGa---GCAGCUaAGGCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home