miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16259 3' -55.4 NC_004084.1 + 58198 0.67 0.70674
Target:  5'- aACGACGaCUCCccCGcCGAUggCCGugCg -3'
miRNA:   3'- -UGCUGCgGAGGa-GCaGCUAa-GGCugG- -5'
16259 3' -55.4 NC_004084.1 + 57782 0.68 0.653455
Target:  5'- gGCGAUGuCCUUCUCGUCG--UCCc-CCa -3'
miRNA:   3'- -UGCUGC-GGAGGAGCAGCuaAGGcuGG- -5'
16259 3' -55.4 NC_004084.1 + 57524 0.7 0.52572
Target:  5'- gACGACGCCgacagCGauacCGAUUCCGACg -3'
miRNA:   3'- -UGCUGCGGagga-GCa---GCUAAGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 57086 0.7 0.515407
Target:  5'- cCGACGgaguaCUCCUaCGUCGAgcgCCGugCu -3'
miRNA:   3'- uGCUGCg----GAGGA-GCAGCUaa-GGCugG- -5'
16259 3' -55.4 NC_004084.1 + 56932 0.69 0.567674
Target:  5'- gGCGACGUCUaCCaggaggUCGUCGAUcgCCGcAUCa -3'
miRNA:   3'- -UGCUGCGGA-GG------AGCAGCUAa-GGC-UGG- -5'
16259 3' -55.4 NC_004084.1 + 56876 0.67 0.717229
Target:  5'- uCGACgGCCgugCCUCgGUCcAgaCCGACCg -3'
miRNA:   3'- uGCUG-CGGa--GGAG-CAGcUaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 56120 0.67 0.696181
Target:  5'- gACGucguGCGCCgcagUgUCGUCGGcgUCGACCa -3'
miRNA:   3'- -UGC----UGCGGa---GgAGCAGCUaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 55655 0.68 0.653455
Target:  5'- uCGGCGCgCUCCaccUCGUUGAUgacCUGugCg -3'
miRNA:   3'- uGCUGCG-GAGG---AGCAGCUAa--GGCugG- -5'
16259 3' -55.4 NC_004084.1 + 54800 0.66 0.748171
Target:  5'- cCGAuCGCCUCgUaGUCGG-UCCaGGCCg -3'
miRNA:   3'- uGCU-GCGGAGgAgCAGCUaAGG-CUGG- -5'
16259 3' -55.4 NC_004084.1 + 54410 0.67 0.70674
Target:  5'- uCGACGCCUCaugUCuacCGAUUCCcACCc -3'
miRNA:   3'- uGCUGCGGAGg--AGca-GCUAAGGcUGG- -5'
16259 3' -55.4 NC_004084.1 + 54188 1.12 0.000816
Target:  5'- aACGACGCCUCCUCGUCGAUUCCGACCg -3'
miRNA:   3'- -UGCUGCGGAGGAGCAGCUAAGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 52795 0.66 0.758274
Target:  5'- aGCGGCuGCUUCagga--GGUUCCGACCg -3'
miRNA:   3'- -UGCUG-CGGAGgagcagCUAAGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 52546 0.7 0.556038
Target:  5'- gUGGCGgucugcuCCUCCUCGUCGAUcgUCUuGAUCg -3'
miRNA:   3'- uGCUGC-------GGAGGAGCAGCUA--AGG-CUGG- -5'
16259 3' -55.4 NC_004084.1 + 51565 0.68 0.66419
Target:  5'- --aACGCCUCUcgguucguggCGUUGAgcgUCCGGCCc -3'
miRNA:   3'- ugcUGCGGAGGa---------GCAGCUa--AGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 51270 0.68 0.642702
Target:  5'- gGCGaACGCUgugUCgUCGUCGAggauauccgUCGACCa -3'
miRNA:   3'- -UGC-UGCGG---AGgAGCAGCUaa-------GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 50605 0.69 0.58898
Target:  5'- aGCG-UGCCUCCagCGUCGAggucgUCGACg -3'
miRNA:   3'- -UGCuGCGGAGGa-GCAGCUaa---GGCUGg -5'
16259 3' -55.4 NC_004084.1 + 50551 0.66 0.758274
Target:  5'- aGCGGaGUCUCCUCGaUCaugUCCGuCCa -3'
miRNA:   3'- -UGCUgCGGAGGAGC-AGcuaAGGCuGG- -5'
16259 3' -55.4 NC_004084.1 + 50268 0.7 0.515407
Target:  5'- gGCGGCGaggUCCUCGaCGucugCCGACCa -3'
miRNA:   3'- -UGCUGCgg-AGGAGCaGCuaa-GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 48525 0.66 0.778098
Target:  5'- gACGuACGCCUUCaCGucaUCGGUcgCCGACUc -3'
miRNA:   3'- -UGC-UGCGGAGGaGC---AGCUAa-GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 48406 0.69 0.609349
Target:  5'- uCGugGCCgccaucucggagaUCUUCGUCGAcgucgUCGGCCa -3'
miRNA:   3'- uGCugCGG-------------AGGAGCAGCUaa---GGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.