miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16263 3' -57.5 NC_004084.1 + 8632 0.78 0.129315
Target:  5'- cGCgaUCGAGAACaccgaggcuguaGUCCUCGCCGAGGg -3'
miRNA:   3'- aCGgaAGCUCUUG------------CAGGGGCGGCUCU- -5'
16263 3' -57.5 NC_004084.1 + 43740 0.66 0.64647
Target:  5'- gGCCaaUCGAGGA---CCCgGCCGGGAc -3'
miRNA:   3'- aCGGa-AGCUCUUgcaGGGgCGGCUCU- -5'
16263 3' -57.5 NC_004084.1 + 9619 0.66 0.635725
Target:  5'- cGUCUUCGA--GCGaUCaaCGCCGAGGg -3'
miRNA:   3'- aCGGAAGCUcuUGC-AGggGCGGCUCU- -5'
16263 3' -57.5 NC_004084.1 + 8542 0.66 0.614234
Target:  5'- cGaCC-UCGAGAucgACGUCCUCaCCGAGu -3'
miRNA:   3'- aC-GGaAGCUCU---UGCAGGGGcGGCUCu -5'
16263 3' -57.5 NC_004084.1 + 5728 0.66 0.60565
Target:  5'- cUGCCggaguauagugCGGGAAuuacgaugacggcacUGcCCCCGCCGGGGc -3'
miRNA:   3'- -ACGGaa---------GCUCUU---------------GCaGGGGCGGCUCU- -5'
16263 3' -57.5 NC_004084.1 + 14703 0.66 0.592802
Target:  5'- cGCCaUCGAuGGCGUCCUggagcuCGuuGAGAu -3'
miRNA:   3'- aCGGaAGCUcUUGCAGGG------GCggCUCU- -5'
16263 3' -57.5 NC_004084.1 + 541 0.67 0.554586
Target:  5'- cGCCgguUCGAGucgaucuGCGacaaggcggggaucuUCCCgGCCGAGGa -3'
miRNA:   3'- aCGGa--AGCUCu------UGC---------------AGGGgCGGCUCU- -5'
16263 3' -57.5 NC_004084.1 + 2079 0.67 0.544091
Target:  5'- aGCC-UCGAGAACGgcaUcgcucgccugcgaauCCUCGUCGAGAa -3'
miRNA:   3'- aCGGaAGCUCUUGC---A---------------GGGGCGGCUCU- -5'
16263 3' -57.5 NC_004084.1 + 22162 0.68 0.528474
Target:  5'- cGCCUcggcgcacUCGAGGACGUCgaCCCGguaggcgaguucuCCGAGc -3'
miRNA:   3'- aCGGA--------AGCUCUUGCAG--GGGC-------------GGCUCu -5'
16263 3' -57.5 NC_004084.1 + 51422 0.68 0.519183
Target:  5'- gGCCUUCGAGGGCGaCa-CGCUGAu- -3'
miRNA:   3'- aCGGAAGCUCUUGCaGggGCGGCUcu -5'
16263 3' -57.5 NC_004084.1 + 30437 0.68 0.519183
Target:  5'- aGCgauggCGAGGACGacgUCCCGCUGGGGa -3'
miRNA:   3'- aCGgaa--GCUCUUGCa--GGGGCGGCUCU- -5'
16263 3' -57.5 NC_004084.1 + 21945 0.75 0.203523
Target:  5'- uUGUCggcgUCcGGAcgACGUCUCCGCCGAGAu -3'
miRNA:   3'- -ACGGa---AGcUCU--UGCAGGGGCGGCUCU- -5'
16263 3' -57.5 NC_004084.1 + 53434 0.73 0.262714
Target:  5'- aUGCC--CGAGuGgGUCCCCGCCGAu- -3'
miRNA:   3'- -ACGGaaGCUCuUgCAGGGGCGGCUcu -5'
16263 3' -57.5 NC_004084.1 + 29073 0.71 0.327298
Target:  5'- cGCCcgcUCGGGGGCGUCgUCGCCGcGGu -3'
miRNA:   3'- aCGGa--AGCUCUUGCAGgGGCGGCuCU- -5'
16263 3' -57.5 NC_004084.1 + 39428 0.71 0.359563
Target:  5'- cGCCagCGGGAccuACGacuUCCCCGCCGGc- -3'
miRNA:   3'- aCGGaaGCUCU---UGC---AGGGGCGGCUcu -5'
16263 3' -57.5 NC_004084.1 + 23125 0.7 0.393984
Target:  5'- cGUCgaaacgaUCGAGGACcUCCCCagcGCCGAGGa -3'
miRNA:   3'- aCGGa------AGCUCUUGcAGGGG---CGGCUCU- -5'
16263 3' -57.5 NC_004084.1 + 57811 0.69 0.449441
Target:  5'- aGCUUcaacgaucaacUCGAGGGCGUCCUCaCCGaAGAg -3'
miRNA:   3'- aCGGA-----------AGCUCUUGCAGGGGcGGC-UCU- -5'
16263 3' -57.5 NC_004084.1 + 53340 0.69 0.459098
Target:  5'- cGUCUUCGAGGuggacuGCGUCgucuacUCCGCCGAc- -3'
miRNA:   3'- aCGGAAGCUCU------UGCAG------GGGCGGCUcu -5'
16263 3' -57.5 NC_004084.1 + 51629 1.08 0.000786
Target:  5'- uUGCCUUCGAGAACGUCCCCGCCGAGAc -3'
miRNA:   3'- -ACGGAAGCUCUUGCAGGGGCGGCUCU- -5'
16263 3' -57.5 NC_004084.1 + 26968 0.66 0.64647
Target:  5'- cUGCCguccUCGAGGGCaGUCaCCCugaaCGAGAc -3'
miRNA:   3'- -ACGGa---AGCUCUUG-CAG-GGGcg--GCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.