Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16263 | 3' | -57.5 | NC_004084.1 | + | 11109 | 0.66 | 0.635725 |
Target: 5'- cGCCgUUCGcggcucgaAGGAUGUCCCagaGCCGcuGGAc -3' miRNA: 3'- aCGG-AAGC--------UCUUGCAGGGg--CGGC--UCU- -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 36243 | 0.7 | 0.385181 |
Target: 5'- cGCCUacCGGGucGACGUCCUcgagugCGCCGAGGc -3' miRNA: 3'- aCGGAa-GCUC--UUGCAGGG------GCGGCUCU- -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 17818 | 0.7 | 0.367969 |
Target: 5'- aGCUUcacCGGGAAC-UCCUCGCCGAGu -3' miRNA: 3'- aCGGAa--GCUCUUGcAGGGGCGGCUCu -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 51629 | 1.08 | 0.000786 |
Target: 5'- uUGCCUUCGAGAACGUCCCCGCCGAGAc -3' miRNA: 3'- -ACGGAAGCUCUUGCAGGGGCGGCUCU- -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 9734 | 0.66 | 0.614234 |
Target: 5'- cGgCUUCGAGGAUcUCCCaCGUCGcGAc -3' miRNA: 3'- aCgGAAGCUCUUGcAGGG-GCGGCuCU- -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 50948 | 0.66 | 0.603506 |
Target: 5'- cGCCUUCGc---CGUCgCCGCuCGAGu -3' miRNA: 3'- aCGGAAGCucuuGCAGgGGCG-GCUCu -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 55234 | 0.67 | 0.539911 |
Target: 5'- cGCC-UCGuucACGUCCUCGCCGucGAc -3' miRNA: 3'- aCGGaAGCucuUGCAGGGGCGGCu-CU- -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 35926 | 0.66 | 0.64647 |
Target: 5'- cGCgUUcaCGAGcAUGUCCCCggcgucGCCGGGGu -3' miRNA: 3'- aCGgAA--GCUCuUGCAGGGG------CGGCUCU- -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 26968 | 0.66 | 0.64647 |
Target: 5'- cUGCCguccUCGAGGGCaGUCaCCCugaaCGAGAc -3' miRNA: 3'- -ACGGa---AGCUCUUG-CAG-GGGcg--GCUCU- -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 11231 | 0.69 | 0.424871 |
Target: 5'- gGCC-UCGAGAAgcCGUCCCggucagcaucccaguCGCCGuAGAg -3' miRNA: 3'- aCGGaAGCUCUU--GCAGGG---------------GCGGC-UCU- -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 20996 | 0.68 | 0.50283 |
Target: 5'- cGCCgcuaUCGAGAuccaaGCGUCCaucaucggccagcguCUGCCGAGu -3' miRNA: 3'- aCGGa---AGCUCU-----UGCAGG---------------GGCGGCUCu -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 41256 | 0.68 | 0.508937 |
Target: 5'- cGCCUUCGAcgucgccggcGAuCGUCCCCaucagugaaccGCCGAc- -3' miRNA: 3'- aCGGAAGCU----------CUuGCAGGGG-----------CGGCUcu -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 53269 | 0.66 | 0.614234 |
Target: 5'- cUGCCUcaGGGAcgACGUCggucgCCaCGCCGAGGu -3' miRNA: 3'- -ACGGAagCUCU--UGCAG-----GG-GCGGCUCU- -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 18848 | 0.68 | 0.488708 |
Target: 5'- gGCUUUCGucGACgGUCCCgGUCGAGu -3' miRNA: 3'- aCGGAAGCucUUG-CAGGGgCGGCUCu -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 37653 | 0.66 | 0.614234 |
Target: 5'- aGCCUUCGuccuCGUCUCCGgUGGGc -3' miRNA: 3'- aCGGAAGCucuuGCAGGGGCgGCUCu -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 19185 | 0.67 | 0.539911 |
Target: 5'- uUGCCgaugUCGuAGAcgACGUCUCCGacaGAGAu -3' miRNA: 3'- -ACGGa---AGC-UCU--UGCAGGGGCgg-CUCU- -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 27957 | 0.69 | 0.459098 |
Target: 5'- cGCC-UCGuagaGGAACGUCCCCaG-CGGGAc -3' miRNA: 3'- aCGGaAGC----UCUUGCAGGGG-CgGCUCU- -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 57109 | 0.7 | 0.385181 |
Target: 5'- cGCCUcgauccagUCGAGGACGUCCUcgguguCGCCGu-- -3' miRNA: 3'- aCGGA--------AGCUCUUGCAGGG------GCGGCucu -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 33226 | 0.66 | 0.614234 |
Target: 5'- gGCCgagCGGGc-CGUCCCCuaCGAGu -3' miRNA: 3'- aCGGaa-GCUCuuGCAGGGGcgGCUCu -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 20822 | 0.67 | 0.560912 |
Target: 5'- gGUCUU-GAGAGCG-CUCC-CCGAGAg -3' miRNA: 3'- aCGGAAgCUCUUGCaGGGGcGGCUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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