Results 41 - 60 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 18051 | 0.66 | 0.955362 |
Target: 5'- --aUGUCGGCGgcUUUGA--UGCCGCg -3' miRNA: 3'- gcaGCAGCUGCauGAGCUucAUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 18366 | 0.67 | 0.913351 |
Target: 5'- gCGggGUCGACG-GCUCGGAcGUGCaGCc -3' miRNA: 3'- -GCagCAGCUGCaUGAGCUU-CAUGgCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 18540 | 0.7 | 0.822215 |
Target: 5'- gGUCGauaccgcacugcagcUCaGCGUGCUCGAcGGcGCCGCg -3' miRNA: 3'- gCAGC---------------AGcUGCAUGAGCU-UCaUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 18849 | 0.72 | 0.717579 |
Target: 5'- -cUCGUCGACGagcUGCUCG-AGUAC-GCa -3' miRNA: 3'- gcAGCAGCUGC---AUGAGCuUCAUGgCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 19656 | 0.68 | 0.885751 |
Target: 5'- gGUCGUCGuGCGUcaUCGGAcGUGCCu- -3' miRNA: 3'- gCAGCAGC-UGCAugAGCUU-CAUGGcg -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 19979 | 0.68 | 0.87037 |
Target: 5'- aCGaCGUCGACGUcgcgcguucGCUCG-AGU-UCGCg -3' miRNA: 3'- -GCaGCAGCUGCA---------UGAGCuUCAuGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 21111 | 0.67 | 0.931174 |
Target: 5'- gCGUCGUCGAUGaGgUCGAAcGUgGCCu- -3' miRNA: 3'- -GCAGCAGCUGCaUgAGCUU-CA-UGGcg -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 23036 | 0.7 | 0.809129 |
Target: 5'- gGUCGUCGACGUGauCUUGgcGcacuUCGCg -3' miRNA: 3'- gCAGCAGCUGCAU--GAGCuuCau--GGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 25168 | 0.66 | 0.943636 |
Target: 5'- aCGUCcUCGACGUccucaucgaACUCGuAGGggacggcccgcucgGCCGCc -3' miRNA: 3'- -GCAGcAGCUGCA---------UGAGC-UUCa-------------UGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 26014 | 0.66 | 0.953676 |
Target: 5'- -cUCGUCGACGggaccgaacgcggACUCGAucgagcGGaGCUGCu -3' miRNA: 3'- gcAGCAGCUGCa------------UGAGCU------UCaUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 27790 | 0.69 | 0.853995 |
Target: 5'- gCGUCGUCG-CGaACUCGuAGU-CgGCg -3' miRNA: 3'- -GCAGCAGCuGCaUGAGCuUCAuGgCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 28022 | 0.66 | 0.941669 |
Target: 5'- uCGUCGUCGAaaagccCGUGCagGcGGUugUGUg -3' miRNA: 3'- -GCAGCAGCU------GCAUGagCuUCAugGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 28785 | 0.77 | 0.430254 |
Target: 5'- gGUCGUCGACGUccggaGC-CGAcagccaGGUGCCGUu -3' miRNA: 3'- gCAGCAGCUGCA-----UGaGCU------UCAUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 29220 | 0.67 | 0.925511 |
Target: 5'- gCG-CGUCGACGUugUuCGcgggcGAGUACuCGUc -3' miRNA: 3'- -GCaGCAGCUGCAugA-GC-----UUCAUG-GCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 29470 | 0.69 | 0.827705 |
Target: 5'- -cUCGUaGACGcGCUCGAGgGUGCgGCg -3' miRNA: 3'- gcAGCAgCUGCaUGAGCUU-CAUGgCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 29724 | 0.67 | 0.912714 |
Target: 5'- gCGUCGUCuGGCcguccgcccaGUGCUCGAcGUugagcucGCUGCg -3' miRNA: 3'- -GCAGCAG-CUG----------CAUGAGCUuCA-------UGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 30055 | 0.71 | 0.759616 |
Target: 5'- uCG-CGUCGuuGUGCcagccgUCGAGGcUGCCGCg -3' miRNA: 3'- -GCaGCAGCugCAUG------AGCUUC-AUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 30097 | 0.69 | 0.845454 |
Target: 5'- --aCGgCGGCGaGCUCGAGGUgcucacuacucGCCGCc -3' miRNA: 3'- gcaGCaGCUGCaUGAGCUUCA-----------UGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 30157 | 0.68 | 0.885751 |
Target: 5'- aGUCGaagccgCGACGgugaACUacguaGGAGUACCGUu -3' miRNA: 3'- gCAGCa-----GCUGCa---UGAg----CUUCAUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 30279 | 0.66 | 0.955362 |
Target: 5'- --aCGaaUCGGCGUGgUCGGGaagGCCGCg -3' miRNA: 3'- gcaGC--AGCUGCAUgAGCUUca-UGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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