miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16265 3' -50.9 NC_004084.1 + 6688 0.67 0.931174
Target:  5'- -cUCGaCGACGUccauCUCGAGGUcaacGCCGg -3'
miRNA:   3'- gcAGCaGCUGCAu---GAGCUUCA----UGGCg -5'
16265 3' -50.9 NC_004084.1 + 7494 0.73 0.652198
Target:  5'- gGUCGUCGACG---UCGAGGccgauCCGCu -3'
miRNA:   3'- gCAGCAGCUGCaugAGCUUCau---GGCG- -5'
16265 3' -50.9 NC_004084.1 + 7695 0.68 0.885751
Target:  5'- aCGUCGUCG-UGaACUCGcggAAGUACCc- -3'
miRNA:   3'- -GCAGCAGCuGCaUGAGC---UUCAUGGcg -5'
16265 3' -50.9 NC_004084.1 + 8288 0.75 0.517177
Target:  5'- -cUCGUCauccgGACGaucgcgggccucgACUCGAAGUACCGCg -3'
miRNA:   3'- gcAGCAG-----CUGCa------------UGAGCUUCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 8817 0.72 0.706829
Target:  5'- cCGUCGaCGGCGaACUCGccAAGUACCu- -3'
miRNA:   3'- -GCAGCaGCUGCaUGAGC--UUCAUGGcg -5'
16265 3' -50.9 NC_004084.1 + 9943 0.68 0.90009
Target:  5'- aCGUgCGUCGGCGgg-UCGGAGUaGCCa- -3'
miRNA:   3'- -GCA-GCAGCUGCaugAGCUUCA-UGGcg -5'
16265 3' -50.9 NC_004084.1 + 11042 0.71 0.738814
Target:  5'- uCGcCGUCGACG-ACgcggaCGAAGgggcgGCCGCc -3'
miRNA:   3'- -GCaGCAGCUGCaUGa----GCUUCa----UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 11094 0.67 0.920176
Target:  5'- gGUCGgCGACGagaucgccguucgcgGCUCGAAGgaugucccagaGCCGCu -3'
miRNA:   3'- gCAGCaGCUGCa--------------UGAGCUUCa----------UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 11147 0.67 0.906857
Target:  5'- aCGUCGUCGAC---CUCGuAGUaggcGCCGg -3'
miRNA:   3'- -GCAGCAGCUGcauGAGCuUCA----UGGCg -5'
16265 3' -50.9 NC_004084.1 + 11406 0.7 0.799557
Target:  5'- uCGaUCG-CGACGUcCUCGAGGaACuCGCg -3'
miRNA:   3'- -GC-AGCaGCUGCAuGAGCUUCaUG-GCG- -5'
16265 3' -50.9 NC_004084.1 + 11729 0.78 0.383823
Target:  5'- aCGUCGccggCGACGUGCUCGA---AUCGCg -3'
miRNA:   3'- -GCAGCa---GCUGCAUGAGCUucaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 12858 0.71 0.738814
Target:  5'- --cCGUCGGCGUACuccgcuUCGAGGUcCuCGCg -3'
miRNA:   3'- gcaGCAGCUGCAUG------AGCUUCAuG-GCG- -5'
16265 3' -50.9 NC_004084.1 + 13135 0.66 0.936034
Target:  5'- gGcCGUCGuCGUACUCGAccuccuucgGGUACacacagaUGCg -3'
miRNA:   3'- gCaGCAGCuGCAUGAGCU---------UCAUG-------GCG- -5'
16265 3' -50.9 NC_004084.1 + 13768 0.68 0.87037
Target:  5'- gGUCGcgcUgGGCGgGCUCGGAG-AUCGCg -3'
miRNA:   3'- gCAGC---AgCUGCaUGAGCUUCaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 14339 0.72 0.706829
Target:  5'- cCGUCuucUCGAgGUACUgCGAGGUGCuaCGCg -3'
miRNA:   3'- -GCAGc--AGCUgCAUGA-GCUUCAUG--GCG- -5'
16265 3' -50.9 NC_004084.1 + 15031 0.78 0.392841
Target:  5'- aG-CGUCGACGgccACUCGAGGUGgUGCu -3'
miRNA:   3'- gCaGCAGCUGCa--UGAGCUUCAUgGCG- -5'
16265 3' -50.9 NC_004084.1 + 16532 0.66 0.93656
Target:  5'- gGUCGUCGugGaccucCUCGcAGU-UCGCg -3'
miRNA:   3'- gCAGCAGCugCau---GAGCuUCAuGGCG- -5'
16265 3' -50.9 NC_004084.1 + 16646 0.69 0.853151
Target:  5'- uCGUCGUCGACGUcgUCcggGAGGUccucgucGCCGg -3'
miRNA:   3'- -GCAGCAGCUGCAugAG---CUUCA-------UGGCg -5'
16265 3' -50.9 NC_004084.1 + 16820 0.71 0.769827
Target:  5'- uCGUCcUCGACGUAgUCGAcGaucuCCGCu -3'
miRNA:   3'- -GCAGcAGCUGCAUgAGCUuCau--GGCG- -5'
16265 3' -50.9 NC_004084.1 + 17350 0.86 0.128371
Target:  5'- -cUCGUCGACGUACUCGcGG-ACCGCu -3'
miRNA:   3'- gcAGCAGCUGCAUGAGCuUCaUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.